博碩士論文 100324005 詳細資訊




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姓名 曾偉志(Wei-chih Tseng)  查詢紙本館藏   畢業系所 化學工程與材料工程學系
論文名稱 兔子免疫球蛋白IgG位向性固定法-針對Fc區域的胜肽配體設計
(Peptide Ligand Design for Oriented immobilization of Rabbit IgG through Its Fc Region)
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摘要(中) 免疫生物感測晶片(Immunosensor chip)需致力改善的部分有二:
一為微晶片儲存期的增長,二為靈敏度的增加。為了進行短鏈胜肽親
合配位子的設計,我們首先在抗體Fc區域的底部尋找較疏水的區域,
然後分析疏水區域的電荷分佈。同時利用疏水作用力以及靜電吸引力
去設計胜肽配位子,預期與Fc 區域底部產生較強的親和力。本研究
使用的抗原為人類前列腺特異抗原(Prostate specific antigen,PSA)並
用兔子免疫球蛋白IgG( Rabbit IgG ) 為目標抗體。利用上述方式設計
出可能的的胜肽配體,再利用分子動態模擬(Molecular dynamic
simulation,MD),尋找出一條與Rabbit IgG具有高親和力的胜肽配體。
接著將胜肽配體接枝於金片表面上,使用表面電漿共振儀測(Surface
plasmon resonance,SPR)量測兔子免疫球蛋白IgG、PSA 以及兔子免
疫球蛋IgG 的二抗(Secondary antibody,2nd antibody)在金片表面的吸
附量,藉此得到兔子IgG 的抗原辨識效率與位向因子。我們也將以
Mouse IgG2a 拿來做測試,看所設計胜肽配位子是否對於Rabbit IgG
具有專一性。結果發現一短鏈胜肽,對於兔子IgG 具有高親和性與專
一性,對PSA 的抗原辨識效果有不錯的成效。因此依據我們提出之
策略所設計出的胜肽配體,確實有效地使抗體位向性固定化於表面。
摘要(英) There are two drawbacks of Immunosensor Chip required to be
improved, one is the shelf life of microchip and the other is sensitivity
enhancement. For the peptide ligand design, we searched for the
hydrophobic patch around the bottom Fc region of antibody and analyzed
the charge distribution among the hydrophobic patch. On the other hand,
we designed another peptide ligands based on the electrostatic interaction
and hydrophobicity which bind strongly to the bottom Fc region of
antibody, as well. In this study, we focused on the Rabbit IgG as the
antibody and the prostate specific antigen (PSA) as the antigen. To find a
peptide ligand with high affinity to Rabbit IgG, we designed all the
possible peptide sequences according to the previous methods and
assisted with molecular dynamics simulation (MD). After immobilizing
peptide ligands onto gold chip surface, we measured the binding
capacities of Rabbit IgG, PSA, and the secondary antibody (2nd antibody)
on gold chip by surface plasmon simulation (SPR). Also, we could obtain
the recognition efficiency of Rabbit IgG to antigen and the orientation
factor by SPR measurement. Besides, on specificity test, we performed
the designed peptide ligands on Mouse IgG2a.The result revealed that a
peptide ligand exhibits high affinity and specificity to Rabbit IgG and has
well effect on the recognition efficiency to PSA antigen. Therefore,
according to the strategy we proposing on peptide ligand design, we can
definitely immobilize the antibody orientedly onto the sensor chip and
further enhance the sensitivity of antibody to antigen detection.
關鍵字(中) ★ 免疫生物感測晶片
★ 短鏈胜肽
★ 位向性固定化
★ 兔子免疫球蛋白
★ 分子動態模擬
★ 表面電漿共振儀測
關鍵字(英) ★ Immunosensor chip
★ Peptide ligand
★ Oriented immobilization
★ Rabbit IgG
★ Molecular dynamic simulation
★ Surface plasmon resonance
論文目次 目錄
摘要 I
Abstract III
目錄 V
圖目錄 X
表目錄 X
第一章緒論 1
1.1 研究動機 1
1.2 研究目的 3
第二章文獻回顧 4
2.1 酵素固定化 4
2.1.1 固定化酵素發展史 4
2.1.2 固定化酵素之優點 4
2.1.2 酵素固定化 5
2.2 抗體與抗原 8
2.2.1 抗體 8
2.2.2 抗原 9
2.2.3 抗原與抗體間的結合力 11
2.3 抗體固定化 13
2.3.1 共價鍵結 14
2.3.2 生物親和性(Bio-affinity) 15
2.3.2.1 Protein A or Protein G 16
2.3.2.2 生物素與親合素系統(Biotin-Avidin) 17
2.3.2.3 組胺酸標籤(His-tagged) 19
2.3.2.4 DNA引導固定化(DNA Directed Immobilization) 20
2.3.2.5 胜肽配體(Peptide ligand) 21
2.4 分子嵌合 22
2.4.1 分子嵌合(Molecular docking)介紹 22
2.4.2 Autodock 24
2.5 分子動態模擬 (Molecular dynamic simulation) 26
2.5.1 分子動態模擬計算方法 27
2.5.2 CHARMM力場(Force field) 29
2.6 表面電漿共振(Surface Plasmon Resonance,SPR ) 30
2.6.1 表面電漿共振原理 30
2.6.2 表面電漿共振原理 33
第三章 實驗藥品、儀器、方法 35
3.3 實驗藥品 35
3.4 實驗儀器 37
3.5 實驗方法 38
3.5.1 Rabbit IgG位向性固定於表面之策略 38
3.5.2 尋找Rabbit IgG Fc區域之表面疏水區塊 39
3.5.3 Ligand理想結合位置篩選 40
3.5.4 設計及篩選與Rabbit IgG Fc底部區域親合性高之Peptide Ligand 40
3.5.5 分子動態模擬(Molecular dynamic simulation) 41
3.5.6 SPR晶片表面改質 42
3.5.7 表面親水性鑑定 44
3.5.8 表面電漿共振(Surface plasmon resonance,SPR)實驗 45
第四章 結果與討論 47
4.1 高親和性之胜肽配體設計 47
4.1.1 尋找Rabbit IgG Fc區域之表面疏水區塊 48
4.1.2 分析胜肽配體可能結合的位置 52
4.2 胜肽配體之設計 55
4.3 模擬以及胜肽配體的篩選 57
4.4 利用表面電漿共振儀量測抗體位向性以及抗原辨識效率 65
4.4.1 表面電漿共振儀感測晶片之改質 66
4.4.2 負電荷表面改質鑑定 66
4.4.3 正電荷表面改質鑑定 68
4.4.4 胜肽配體表面改質鑑定 69
4.5 抗原偵測靈敏度測試(Rabbit IgG和Mouse IgG2a) 83
4.6 Rabbit IgG抗原辨識能力分析 69
4.7 Rabbit IgG在表面之位向性分析與比較 77
第五章 結論 85
第六章 參考文獻 87
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指導教授 阮若屈(Ruoh-chyu Ruaan) 審核日期 2013-8-28
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