參考文獻 |
1. Bast Jr, R., et al., CA 125: the past and the future. The International journal of biological markers, 1997. 13(4): p. 179-187.
2. Denison, C. and T. Kodadek, Small-molecule-based strategies for controlling gene expression. Chemistry & biology, 1998. 5(6): p. R129-R145.
3. Dervan, P.B., Molecular recognition of DNA by small molecules. Bioorganic & medicinal chemistry, 2001. 9(9): p. 2215-2235.
4. Demidov, V.V. and M.D. Frank-Kamenetskii, Two sides of the coin: affinity and specificity of nucleic acid interactions. Trends in biochemical sciences, 2004. 29(2): p. 62-71.
5. Tomac, S., et al., Ionic effects on the stability and conformation of peptide nucleic acid complexes. Journal of the American Chemical Society, 1996. 118(24): p. 5544-5552.
6. Koppelhus, U. and P.E. Nielsen, Cellular delivery of peptide nucleic acid (PNA). Advanced drug delivery reviews, 2003. 55(2): p. 267-280.
7. Egholm, M., et al., PNA hybridizes to complementary oligonucleotides obeying the Watson Crick hydrogen-bonding rules. 1993.
8. Zhang, G.-J., et al., Label-free direct detection of MiRNAs with silicon nanowire biosensors. Biosensors and Bioelectronics, 2009. 24(8): p. 2504-2508.
9. Hahm, J.-I. and C.M. Lieber, Direct ultrasensitive electrical detection of DNA and DNA sequence variations using nanowire nanosensors. Nano letters, 2004. 4(1): p. 51-54.
10. Cattani-Scholz, A., et al., Organophosphonate-based PNA-functionalization of silicon nanowires for label-free DNA detection. ACS nano, 2008. 2(8): p. 1653-1660.
11. Zhang, G.-J., et al., Highly sensitive measurements of PNA-DNA hybridization using oxide-etched silicon nanowire biosensors. Biosensors and Bioelectronics, 2008. 23(11): p. 1701-1707.
12. Li, Z., et al., Silicon nanowires for sequence-specific DNA sensing: device fabrication and simulation. Applied Physics A, 2005. 80(6): p. 1257-1263.
13. Gao, Z., et al., Silicon nanowire arrays for label-free detection of DNA. Analytical Chemistry, 2007. 79(9): p. 3291-3297.
14. Zhang, G.-J., et al., Silicon nanowire biosensor for highly sensitive and rapid detection of Dengue virus. Sensors and Actuators B: Chemical, 2010. 146(1): p. 138-144.
15. Cai, B., et al., Ultrasensitive label-free detection of PNA–DNA hybridization by reduced graphene oxide field-effect transistor biosensor. ACS nano, 2014. 8(3): p. 2632-2638.
16. Obika, S., et al., Synthesis of 2′-O, 4′-C-methyleneuridine and-cytidine. Novel bicyclic nucleosides having a fixed C 3,-endo sugar puckering. Tetrahedron Letters, 1997. 38(50): p. 8735-8738.
17. Bondensgaard, K., et al., Structural studies of LNA: RNA duplexes by NMR: conformations and implications for RNase H activity. Chemistry-A European Journal, 2000. 6(15): p. 2687-2695.
18. Koshkin, A.A., et al., LNA (locked nucleic acid): an RNA mimic forming exceedingly stable LNA: LNA duplexes. Journal of the American Chemical Society, 1998. 120(50): p. 13252-13253.
19. Summerton, J. and D. WELLER, Morpholino antisense oligomers: design, preparation, and properties. Antisense and Nucleic Acid Drug Development, 1997. 7(3): p. 187-195.
20. Summerton, J., Morpholino antisense oligomers: the case for an RNase H-independent structural type. Biochimica et Biophysica Acta (BBA)-Gene Structure and Expression, 1999. 1489(1): p. 141-158.
21. Zhang, G.-J., et al., Morpholino-functionalized silicon nanowire biosensor for sequence-specific label-free detection of DNA. Biosensors and Bioelectronics, 2010. 25(11): p. 2447-2453.
22. Koole, L.H., et al., Synthesis of phosphate-methylated DNA fragments using 9-fluorenylmethoxycarbonyl as transient base protecting group. The Journal of Organic Chemistry, 1989. 54(7): p. 1657-1664.
23. Kuijpers, W., et al., Synthesis of well-defined phosphate-methylated DNA fragments: the application of potassium carbonate in methanol as deprotecting reagent. Nucleic acids research, 1990. 18(17): p. 5197-5205.
24. van Genderen, M.H., L.H. Koole, and H.M. Buck, Hybridization of phosphate‐methylated DNA and natural oligonucleotides. Implications for protein‐induced DNA duplex destabilization. Recueil des Travaux Chimiques des Pays-Bas, 1989. 108(1): p. 28-35.
25. Coenen, A., et al., Optimization of the separation of the Rp and Sp diastereomers of phosphate-methylated DNA and RNA dinucleotides. Journal of Chromatography A, 1992. 596(1): p. 59-66.
26. Miller, P.S., et al., Syntheses and properties of adenine and thymine nucleoside alkyl phosphotriesters, the neutral analogs of dinucleoside monophosphates. Journal of the American Chemical Society, 1971. 93(24): p. 6657.
27. Miller, P.S., L.T. Braiterman, and P.O. Ts′o, Effects of a trinucleotide ethyl phosphotriester, Gmp (Et) Gmp (Et) U, on mammalian cells in culture. Biochemistry, 1977. 16(9): p. 1988-1996.
28. Koole, L.H. and H.M. Buck. Enhanced stability of a Watson & Crick DNA duplex structure by methylation of the phosphate groups in one strand. in Proc. K. Ned. Acad. Wet. 1987.
29. Buck, H.M., A conformational BZ DNA study monitored with phosphatemethylated DNA as a model for epigenetic dynamics focused on 5-(hydroxy) methylcytosine. 2013.
30. Mu, L., et al., Silicon Nanowire Field-Effect Transistors—A Versatile Class of Potentiometric Nanobiosensors. Access, IEEE, 2015. 3: p. 287-302.
31. Caruthers, M.H., Gene synthesis machines: DNA chemistry and its uses. Science, 1985. 230(4723): p. 281-285.
32. Brown, T. and T.B. Jr. Solid phase oligonucleotide synthesis. Available from: http://www.atdbio.com/content/17/Solid-phase-oligonucleotide-synthesis.
33. Chen, C.-H., et al., Convergent Solution Phase Synthesis of Chimeric Oligonucleotides by a 2+ 2 and 3+ 3 Phosphoramidite Strategy. Australian journal of chemistry, 2010. 63(2): p. 227-235.
34. Schmid, F.X., Biological Macromolecules: UV‐visible Spectrophotometry. eLS, 2001.
35. Dell, E.J. and F. Ganske. Old Assays, New Instrument: ELISA; NADH and NADPH Conversion; DNA and Protein Quantitation. Available from: http://www.bmglabtech.com/en/applications/application-notes/169-old-assays-new-instrument-elisa-nadh-and-nadph-conversion-dna-and-protein-quantitation-obj-94-829.html.
36. Kelly, S.M., T.J. Jess, and N.C. Price, How to study proteins by circular dichroism. Biochimica Et Biophysica Acta-Proteins and Proteomics, 2005. 1751(2): p. 119-139.
37. Gray, D.M., R.L. Ratliff, and M.R. Vaughan, Circular-Dichroism Spectroscopy of DNA. Methods in Enzymology, 1992. 211: p. 389-406.
38. Lin, K.C., et al., Characterization of the Interactions of Lysozyme with DNA by Surface Plasmon Resonance and Circular Dichroism Spectroscopy. Applied Biochemistry and Biotechnology, 2009. 158(3): p. 631-641.
39. Kypr, J., et al., Circular dichroism and conformational polymorphism of DNA. Nucleic acids research, 2009. 37(6): p. 1713-1725.
40. Genderen, v.M., Structure and stability of phosphate-methylated DNA duplexes: model systems for specific DNA-protein interaction and conformational transmission. 1989, Technische Universiteit Eindhoven.
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