| 參考文獻 |
Agarwal, M., Hao, Y., Kapoor, A., Dong, C.-H., Fujii, H., Zheng, X., and Zhu, J.-K.
(2006). A R2R3 type MYB transcription factor is involved in the cold regulation of
CBF genes and in acquired freezing tolerance. Journal of Biological Chemistry 281,
37636-37645.
Ahmad, S., Ahmad, R., Ashraf, M.Y., Ashraf, M., and Waraich, E.A. (2009). Sunflower
(Helianthus annuus L.) response to drought stress at germination and seedling growth
stages. Pak. J. Bot 41, 647-654.
Albuquerque, M.d.F., and de Carvalho, N.d. (2003). Effect of the type of environmental
stress on the emergence of sunflower (Helianthus annus L.), soybean (Glycine max (L.)
Merril) and maize (Zea mays L.) seeds with different levels of vigor. Seed Science and
Technology (Switzerland) 31, 465-479.
Ali, G.S., and Reddy, A.S. (2006). ATP, phosphorylation and transcription regulate the
mobility of plant splicing factors. Journal of Cell Science 119, 3527-3538.
Andaya, V., and Mackill, D. (2003). Mapping of QTLs associated with cold tolerance during
the vegetative stage in rice. Journal of Experimental Botany 54, 2579-2585.
Asakura, Y., Galarneau, E., Watkins, K.P., Barkan, A., and van Wijk, K.J. (2012).
Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in
splicing of specific group II introns and affect chloroplast ribosome biogenesis. Plant
Physiology 159, 961-974.
Aubourg, S., Kreis, M., and Lecharny, A. (1999). The DEAD box RNA helicase family in
Arabidopsis thaliana. Nucleic Acids Research 27, 628-636.
Banroques, J., Cordin, O., Doère, M., Linder, P., and Tanner, N.K. (2011). Analyses of the
functional regions of DEAD-box RNA ―helicases‖ with deletion and chimera
constructs tested in vivo and in vitro. Journal of Molecular Biology 413, 451-472.
Beck, E.H., Fettig, S., Knake, C., Hartig, K., and Bhattarai, T. (2007). Specific and
unspecific responses of plants to cold and drought stress. Journal of Biosciences 32,
501-510.
Beven, A.F., Simpson, G.G., Brown, J., and Shaw, P.J. (1995). The organization of
spliceosomal components in the nuclei of higher plants. Journal of Cell Science 108,
509-518.
Boudonck, K., Dolan, L., and Shaw, P.J. (1998). Coiled body numbers in the Arabidopsis
root epidermis are regulated by cell type, developmental stage and cell cycle
parameters. Journal of Cell Science 111, 3687-3694.
Burge, C.B., Tuschl, T., and Sharp, P.A. (1999). 20 Splicing of Precursors to mRNAs by the
Spliceosomes. Cold Spring Harbor Monograph Archive 37, 525-560.
Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B.-h., Hong, X., Agarwal, M., and Zhu, J.-K.
(2003). ICE1: a regulator of cold-induced transcriptome and freezing tolerance inArabidopsis. Genes & Development 17, 1043-1054.
Chung, E., Cho, C.-W., Yun, B.-H., Choi, H.-K., So, H.-A., Lee, S.-W., and Lee, J.-H.
(2009). Molecular cloning and characterization of the soybean DEAD-box RNA
helicase gene induced by low temperature and high salinity stress. Gene 443, 91-99.
Cordin, O., Banroques, J., Tanner, N.K., and Linder, P. (2006). The DEAD-box protein
family of RNA helicases. Gene 367, 17-37.
Dayyeh, B.K.A., Quan, T.K., Castro, M., and Ruby, S.W. (2002). Probing interactions
between the U2 small nuclear ribonucleoprotein and the DEAD-box protein, Prp5.
Journal of Biological Chemistry 277, 20221-20233.
de la Cruz, J., Kressler, D., and Linder, P. (1999). Unwinding RNA in Saccharomyces
cerevisiae: DEAD-box proteins and related families. Trends in Biochemical Sciences
24, 192-198.
Dhindsa, R.S., and Monroy, A.F. (1994). Low temperature signal transduction, gene
expression, and cold acclimation: Multiple roles of low temperature. Biochemical and
Cellular Mechanisms of Stress Tolerance in Plants, 501-514.
Dong, C.-H., Agarwal, M., Zhang, Y., Xie, Q., and Zhu, J.-K. (2006). The negative
regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the
ubiquitination and degradation of ICE1. Proceedings of the National Academy of
Sciences 103, 8281-8286.
Dou, S., Wei, J., Cao, Y., and Lan, J. (2011). Molecular characterization and preliminary
functional analysis of cystatin OC-I in rice. Journal of Food, Agriculture and
Environment 9, 235-239.
Feng, Y., Yoshinaga, I., Shiratani, E., Hitomi, T., and Hasebe, H. (2004). Characteristics
and behavior of nutrients in a paddy field area equipped with a recycling irrigation
system. Agricultural Water Management 68, 47-60.
Fu, X.-D. (1995). The superfamily of arginine/serine-rich splicing factors. Rna 1, 663.
Gilmour, S.J., Sebolt, A.M., Salazar, M.P., Everard, J.D., and Thomashow, M.F. (2000).
Overexpression of the Arabidopsis CBF3transcriptional activator mimics multiple
biochemical changes associated with cold acclimation. Plant Physiology 124,
1854-1865.
Gong, Z., Lee, H., Xiong, L., Jagendorf, A., Stevenson, B., and Zhu, J.-K. (2002). RNA
helicase-like protein as an early regulator of transcription factors for plant chilling and
freezing tolerance. Proceedings of the National Academy of Sciences 99,
11507-11512.
Gong, Z., Dong, C.-H., Lee, H., Zhu, J., Xiong, L., Gong, D., Stevenson, B., and Zhu,
J.-K. (2005). A DEAD box RNA helicase is essential for mRNA export and important
for development and stress responses in Arabidopsis. The Plant Cell 17, 256-267.
Graveley, B.R. (2000). Sorting out the complexity of SR protein functions. Rna 6,
1197-1211.
Guan, Q., Wu, J., Zhang, Y., Jiang, C., Liu, R., Chai, C., and Zhu, J. (2013). A DEAD
box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation,
and cold tolerance in Arabidopsis. The Plant Cell 25, 342-356.
Guy, C.L. (1990). Cold accelimation and freezing stress tolerance: role of protein metabolism.
Annual Review of Plant Biology 41, 187-223.
Guy, C.L., Anderson, J.V., Haskell, D.W., and Li, Q.-B. (1994). Caps, cors, dehydrins, and
molecular chaperones: their relationship with low temperature responses in spinach. In
Biochemical and Cellular Mechanisms of Stress Tolerance in Plants (Springer), pp.
479-499.
Huang, C.-K., Sie, Y.-S., Chen, Y.-F., Huang, T.-S., and Lu, C.-A. (2016). Two highly
similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation
factor 4AIII, play roles of the exon junction complex in regulating growth and
development in rice. BMC Plant Biology 16, 1-15.
Huang, C.-K., Huang, L.-F., Huang, J.-J., Wu, S.-J., Yeh, C.-H., and Lu, C.-A. (2010a). A
DEAD-box protein, AtRH36, is essential for female gametophyte development and is
involved in rRNA biogenesis in Arabidopsis. Plant and Cell Physiology 51, 694-706.
Huang, T.-S., Wei, T., Laliberté, J.-F., and Wang, A. (2010b). A host RNA helicase-like
protein, AtRH8, interacts with the potyviral genome-linked protein, VPg, associates
with the virus accumulation complex, and is essential for infection. Plant Physiology
152, 255-266.
Huang, Y., and Steitz, J.A. (2005). SRprises along a messenger’s journey. Molecular cell 17,
613-615.
Ishitani, M., Xiong, L., Lee, H., Stevenson, B., and Zhu, J.-K. (1998). HOS1, a genetic
locus involved in cold-responsive gene expression in Arabidopsis. The Plant Cell 10,
1151-1161.
Kalyna, M., and Barta, A. (2004). A plethora of plant serine/arginine-rich proteins:
redundancy or evolution of novel gene functions? Biochemical Society Transactions
32, 561-564.
Kalyna, M., Lopato, S., and Barta, A. (2003). Ectopic expression of atRSZ33 reveals its
function in splicing and causes pleiotropic changes in development. Molecular
Biology of the Cell 14, 3565-3577.
Kant, P., Kant, S., Gordon, M., Shaked, R., and Barak, S. (2007). STRESS RESPONSE
SUPPRESSOR1 and STRESS RESPONSE SUPPRESSOR2, two DEAD-box RNA
helicases that attenuate Arabidopsis responses to multiple abiotic stresses. Plant
Physiology 145, 814-830.
Kim, J.L., Morgenstern, K.A., Griffith, J.P., Dwyer, M.D., Thomson, J.A., Murcko, M.A.,
Lin, C., and Caron, P.R. (1998). Hepatitis C virus NS3 RNA helicase domain with a
bound oligonucleotide: the crystal structure provides insights into the mode of
unwinding. Structure 6, 89-100.
Knight, H., Mugford, S.G., Ü lker, B., Gao, D., Thorlby, G., and Knight, M.R. (2009).
Identification of SFR6, a key component in cold acclimation acting post ‐
translationally on CBF function. The Plant Journal 58, 97-108.
Kovalev, N., Barajas, D., and Nagy, P.D. (2012). Similar roles for yeast Dbp2 and
Arabidopsis RH20 DEAD-box RNA helicases to Ded1 helicase in tombusvirus
plus-strand synthesis. Virology 432, 470-484.
Lazar, G., Schaal, T., Maniatis, T., and Goodman, H.M. (1995). Identification of a plant
serine-arginine-rich protein similar to the mammalian splicing factor SF2/ASF.
Proceedings of the National Academy of Sciences 92, 7672-7676.
Lee, H., Xiong, L., Gong, Z., Ishitani, M., Stevenson, B., and Zhu, J.-K. (2001). The
Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a
RING finger protein that displays cold-regulated nucleo–cytoplasmic partitioning.
Genes & Development 15, 912-924.
Li, D., Liu, H., Zhang, H., Wang, X., and Song, F. (2008). OsBIRH1, a DEAD-box RNA
helicase with functions in modulating defence responses against pathogen infection
and oxidative stress. Journal of Experimental Botany 59, 2133-2146.
Li, Y., Yang, L.Z., and Wang, C. (2010). Evaluation of fertilizing schemes for direct-seeding
rice fields in Taihu Lake Basin, China. Turkish Journal of Agriculture and Forestry 34,
83-90.
Linder, P. (1989). Birth of the DEAD box. Nature 337, 121-122.
Linder, P., and Jankowsky, E. (2011). From unwinding to clamping—the DEAD box RNA
helicase family. Nature reviews Molecular Cell Biology 12, 505-516.
Liu, M., Shi, D.Q., Yuan, L., Liu, J., and Yang, W.C. (2010). SLOW WALKER3, encoding
a putative DEAD‐box RNA Helicase, is essential for female gametogenesis in
Arabidopsis. Journal of Integrative Plant Biology 52, 817-828.
Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., and
Shinozaki, K. (1998). Two transcription factors, DREB1 and DREB2, with an
EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways
in drought-and low-temperature-responsive gene expression, respectively, in
Arabidopsis. The Plant Cell 10, 1391-1406.
Lopato, S., Gattoni, R., Fabini, G., Stevenin, J., and Barta, A. (1999a). A novel family of
plant splicing factors with a Zn knuckle motif: examination of RNA binding and
splicing activities. Plant Molecular Biology 39, 761-773.
Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A.R., and Barta, A. (1999b).
atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates
splicing of specific plant genes. Genes & Development 13, 987-1001.
Lorković, Z., Herrmann, R.G., and Oelmüller, R. (1997). PRH75, a new nucleus-localized
member of the DEAD-box protein family from higher plants. Molecular and Cellular
Biology 17, 2257-2265.
Lorković, Z.J., and Barta, A. (2002). Genome analysis: RNA recognition motif (RRM) and
K homology (KH) domain RNA-binding proteins from the flowering plant
Arabidopsis thaliana. Nucleic Acids Research 30, 623-635.
Lorković, Z.J., and Barta, A. (2004). Compartmentalization of the splicing machinery in
plant cell nuclei. Trends in Plant Science 9, 565-568.
Lorković, Z.J., Hilscher, J., and Barta, A. (2004). Use of fluorescent protein tags to study
nuclear organization of the spliceosomal machinery in transiently transformed living
plant cells. Molecular Biology of the Cell 15, 3233-3243.
Lorković, Z.J., Kirk, D.A.W., Lambermon, M.H., and Filipowicz, W. (2000). Pre-mRNA
splicing in higher plants. Trends in Plant Science 5, 160-167.
Mahajan, S., and Tuteja, N. (2005). Cold, salinity and drought stresses: an overview.
Archives of Biochemistry and Biophysics 444, 139-158.
Medina, J.n., Bargues, M., Terol, J., Pérez-Alonso, M., and Salinas, J. (1999). The
Arabidopsis CBF gene family is composed of three genes encoding AP2
domain-containing proteins whose expression is regulated by low temperature but not
by abscisic acid or dehydration. Plant Physiology 119, 463-470.
Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.-R.,
Carré, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes
required to maintain circadian rhythms in Arabidopsis. Developmental Cell 2,
629-641.
Nadimpalli, R., Yalpani, N., Johal, G.S., and Simmons, C.R. (2000). Prohibitins, stomatins,
and plant disease response genes comprise a protein superfamily that controls cell
proliferation, ion channel regulation, and death. Journal of Biological Chemistry.
Novillo, F., Alonso, J.M., Ecker, J.R., and Salinas, J. (2004). CBF2/DREB1C is a negative
regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role
in stress tolerance in Arabidopsis. Proceedings of the National Academy of Sciences
of the United States of America 101, 3985-3990.
Palva, E.T., Welin, B., Vahala, T., Olson, Å ., Nordin-Henriksson, K., Mäntylä, E., and
Lång, V. (1994). Regulation of low temperature-induced genes during cold
acclimation of Arabidopsis thaliana. In Biochemical and Cellular Mechanisms of
Stress Tolerance in Plants (Springer), pp. 527-542.
Parvanova, D., Ivanov, S., Konstantinova, T., Karanov, E., Atanassov, A., Tsvetkov, T.,
Alexieva, V., and Djilianov, D. (2004). Transgenic tobacco plants accumulating
osmolytes show reduced oxidative damage under freezing stress. Plant Physiology and
Biochemistry 42, 57-63.
Pause, A., Méthot, N., and Sonenberg, N. (1993). The HRIGRXXR region of the DEAD
box RNA helicase eukaryotic translation initiation factor 4A is required for RNA
binding and ATP hydrolysis. Molecular and Cellular Biology 13, 6789-6798.
Rappsilber, J., Ryder, U., Lamond, A.I., and Mann, M. (2002). Large-scale proteomicanalysis of the human spliceosome. Genome research 12, 1231-1245.
Reddy, A.S. (2004). Plant serine/arginine-rich proteins and their role in pre-mRNA splicing.
Trends in Plant Science 9, 541-547.
Reed, R. (2000). Mechanisms of fidelity in pre-mRNA splicing. Current Opinion in Cell
Biology 12, 340-345.
Rivera-Milla, E., Stuermer, C., and Málaga-Trillo, E. (2006). Ancient origin of reggie
(flotillin), reggie-like, and other lipid-raft proteins: convergent evolution of the SPFH
domain. Cellular and Molecular Life Sciences CMLS 63, 343-357.
Rocak, S., and Linder, P. (2004). DEAD-box proteins: the driving forces behind RNA
metabolism. Nature reviews Molecular Cell Biology 5, 232-241.
Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carré, I.A., and Coupland,
G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian
rhythms and the photoperiodic control of flowering. Cell 93, 1219-1229.
Shaw, P.J., and Brown, J.W. (2004). Plant nuclear bodies. Current Opinion in Plant Biology
7, 614-620.
Shen, J., Zhang, L., and Zhao, R. (2007). Biochemical characterization of the ATPase and
helicase activity of UAP56, an essential pre-mRNA splicing and mRNA export factor.
Journal of Biological Chemistry 282, 22544-22550.
Shi, Y., Tian, S., Hou, L., Huang, X., Zhang, X., Guo, H., and Yang, S. (2012). Ethylene
signaling negatively regulates freezing tolerance by repressing expression of CBF and
type-A ARR genes in Arabidopsis. The Plant Cell 24, 2578-2595.
Shimizu, K.K., Ito, T., Ishiguro, S., and Okada, K. (2008). MAA3 (MAGATAMA3)
helicase gene is required for female gametophyte development and pollen tube
guidance in Arabidopsis thaliana. Plant and Cell Physiology 49, 1478-1483.
Singh, M., Bhattacharya, A., Nair, T., and Singh, A. (2002). Nitrogen loss through
subsurface drainage effluent in coastal rice field from India. Agricultural Water
Management 52, 249-260.
Steponkus, P.L., Uemura, M., Joseph, R.A., Gilmour, S.J., and Thomashow, M.F. (1998).
Mode of action of the COR15a gene on the freezing tolerance of Arabidopsis thaliana.
Proceedings of the National Academy of Sciences 95, 14570-14575.
Stockinger, E.J., Gilmour, S.J., and Thomashow, M.F. (1997). Arabidopsis thaliana CBF1
encodes an AP2 domain-containing transcriptional activator that binds to the
C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in
response to low temperature and water deficit. Proceedings of the National Academy
of Sciences 94, 1035-1040.
Stonebloom, S., Burch-Smith, T., Kim, I., Meinke, D., Mindrinos, M., and Zambryski, P.
(2009). Loss of the plant DEAD-box protein ISE1 leads to defective mitochondria and
increased cell-to-cell transport via plasmodesmata. Proceedings of the National
Academy of Sciences 106, 17229-17234.
Tanner, N.K., and Linder, P. (2001). DExD/H box RNA helicases: from generic motors to
specific dissociation functions. Molecular Cell 8, 251-262.
Tanner, N.K., Cordin, O., Banroques, J., Doère, M., and Linder, P. (2003). The Q motif: a
newly identified motif in DEAD box helicases may regulate ATP binding and
hydrolysis. Molecular Cell 11, 127-138.
Tavernarakis, N., Driscoll, M., and Kyrpides, N.C. (1999). The SPFH domain: implicated
in regulating targeted protein turnover in stomatins and other membrane-associated
proteins. Trends in Biochemical Sciences 24, 425-427.
Thomashow, M.F. (1994). 30 Arabidopsis thaliana as a Model for Studying Mechanisms of
Plant Cold Tolerance. Cold Spring Harbor Monograph Archive 27, 807-834.
Thomashow, M.F. (1999). Plant cold acclimation: freezing tolerance genes and regulatory
mechanisms. Annual Review of Plant Biology 50, 571-599.
Tillemans, V., Dispa, L., Remacle, C., Collinge, M., and Motte, P. (2005). Functional
distribution and dynamics of Arabidopsis SR splicing factors in living plant cells. The
Plant Journal 41, 567-582.
Tillemans, V., Leponce, I., Rausin, G., Dispa, L., and Motte, P. (2006). Insights into
nuclear organization in plants as revealed by the dynamic distribution of Arabidopsis
SR splicing factors. The Plant Cell 18, 3218-3234.
Umate, P., Tuteja, R., and Tuteja, N. (2010). Genome-wide analysis of helicase gene family
from rice and Arabidopsis: a comparison with yeast and human. Plant Molecular
Biology 73, 449-465.
Velankar, S.S., Soultanas, P., Dillingham, M.S., Subramanya, H.S., and Wigley, D.B.
(1999). Crystal structures of complexes of PcrA DNA helicase with a DNA substrate
indicate an inchworm mechanism. Cell 97, 75-84.
Vijayraghavan, U., and Abelson, J. (1989). Isolation and characterization of pre-mRNA
splicing mutants of Saccharomyces cerevisiae. Genes & Development 3, 1206-1216.
Vivek, K., Gomez, S.M., Suresh, R., Kumar, S.S., Yogameenakshi, P., Chezhian, P.,
Boopathi, N.M., Shanmugasundaram, P., and Babu, R.C. (2004). Genetic diversity
analysis among rice accessions differing in drought tolerance using molecular markers.
Journal of Food, Agriculture and Environment 2, 217-222.
Vogel, J.T., Zarka, D.G., Van Buskirk, H.A., Fowler, S.G., and Thomashow, M.F. (2005).
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature
transcriptome of Arabidopsis. The Plant Journal 41, 195-211.
Wahl, M.C., Will, C.L., and Lührmann, R. (2009). The spliceosome: design principles of a
dynamic RNP machine. Cell 136, 701-718.
Walker, J.E., Saraste, M., Runswick, M.J., and Gay, N.J. (1982). Distantly related
sequences in the alpha-and beta-subunits of ATP synthase, myosin, kinases and other
ATP-requiring enzymes and a common nucleotide binding fold. The EMBO Journal 1,
945.
Wang, Z.-Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK
ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own
expression. Cell 93, 1207-1217.
Winey, M., and Culbertson, M. (1988). Mutations affecting the tRNA-splicing endonuclease
activity of Saccharomyces cerevisiae. Genetics 118, 609-617.
Xu, J., Liu, C., Li, M., Hu, J., Zhu, L., Zeng, D., Yang, Y., Peng, Y., Ruan, B., and Guo, L.
(2015). A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal
RNA maturation in Escherichia coli. Gene 555, 318-328.
Xu, Y.Z., Newnham, C.M., Kameoka, S., Huang, T., Konarska, M.M., and Query, C.C.
(2004). Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association
with intron RNA. The EMBO Journal 23, 376-385.
Yamaguchi-Shinozaki, K., and Shinozaki, K. (1994). A novel cis-acting element in an
Arabidopsis gene is involved in responsiveness to drought, low-temperature, or
high-salt stress. The Plant Cell 6, 251-264.
Yoon, C.G., Ham, J.-H., and Jeon, J.-H. (2003). Mass balance analysis in Korean paddy
rice culture. Paddy and Water Environment 1, 99-106.
Zhang, X., Chen, Y., Wang, Z.Y., Chen, Z., Gu, H., and Qu, L.J. (2007). Constitutive
expression of CIR1 (RVE2) affects several circadian‐regulated processes and seed
germination in Arabidopsis. The Plant Journal 51, 512-525.
Zhou, Z., Licklider, L.J., Gygi, S.P., and Reed, R. (2002). Comprehensive proteomic
analysis of the human spliceosome. Nature 419, 182-185. |
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