We describe the environmental variation in the Banda Sea over the past 820 ka by using the magnetic parameters and oxygen isotope data from the core MD012380. Overall, characteristics of the magnetic parameters show simultaneous variation with marine isotope stage (MIS), especially in the last 420 ka. There are fewer, coarser and more oxidative magnetic minerals in glacial periods, and turn to opposite conditions in interglacial periods. Spectral results clearly present the Milankovitch periods over the last 820 ka, especially the eccentricity period (400-ka and 100-ka). However, the magnetic data shows different pattern before and after 420 ka. Thus, we segmented the time-series data into two periods: MIS 20 to MIS 12 and MIS 11 to MIS 1. During MIS 20 to MIS 12, the spectra of magnetic data show clear periods related to the obliquity (41-ka) and precession (23-ka and 19-ka), while they present only the eccentricity period (100-ka) during MIS 11 to MIS 1. This feature, which splits the late Pleistocene at around 420 ka, could be attributed to the mid-Brunhes event (MBE). In the Banda Sea, main factor controlling the variation of the magnetic minerals is considered as the fluctuation of the Indonesian Throughflow (ITF) intensity due to sea-level change. Thus, the magnetic data show clear 400-ka and 100-ka periods (main MIS cycle). Besides, the eccentricity signals are relatively dominant in the last 420 ka, implying that the ITF might become more important after the MBE in the Banda Sea. (C) 2010 Elsevier Ltd. All rights reserved.