基於基因表現資料辦識轉錄調控模組之系統;A System to Identify Transcriptional Regulation Modules Based on Gene Expression Data

NCUIR > College of Electrical Engineering & Computer Science > Department of Computer Science and information Engineering > Research Project > Item 987654321/62960

Please use this identifier to cite or link to this item: http://ir.lib.ncu.edu.tw/handle/987654321/62960

Title:	基於基因表現資料辦識轉錄調控模組之系統;A System to Identify Transcriptional Regulation Modules Based on Gene Expression Data
Authors:	洪炯宗
Contributors:	國立中央大學資訊工程系
Keywords:	資訊科學;軟體
Date:	2012-12-01
Issue Date:	2014-03-17 14:15:22 (UTC+8)
Publisher:	行政院國家科學委員會
Abstract:	研究期間：10108~10207;In this project, we propose an analysis flow to combine genome databases, analysis tools and methods to identify transcription factors, regulation targets and relationship between transcription factors and targets. We plan to collect gene expression profiles and to examine dependency between a transcription factor and feasible regulation targets. Several positive samples contains transcription factor and its known regulation targets are successful identified in our pilot study. This system can also report a group of genes potentially regulated by the transcription factors. The putative targets are also verified by biological experiments in our pilot study. We will also develop an approach to identify regulation partners that cause of the differentially regulation in different cell-lines. The approach will use discriminate analysis to build classification models and select discriminate transcription factor from the discriminate models to be the candidates the regulation partner in the regulation module. In our pilot study in liver cancer cell-lines, several putative cofactors are known related to various cancers. It shows the proposed approach is sufficient to identify regulation module and regulation targets. In this project, we will completely examine the proposed approaches at first. Then we will develop a system to identity regulation modules and downstream regulation targets based on the proposed approach.
Relation:	財團法人國家實驗研究院科技政策研究與資訊中心
Appears in Collections:	[Department of Computer Science and information Engineering] Research Project

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