參考文獻 |
[1] D. Connors, J. Allen, J. Alvarez, J. Boyle, M. Cristofanilli, C. Hiller, S. Keating, G. Kelloff, L. Leiman, R. McCormack, International liquid biopsy standardization alliance white paper, Critical reviews in oncology/hematology 156 (2020) 103112.
[2] A. Jung, T. Kirchner, Liquid biopsy in tumor genetic diagnosis, Deutsches Ärzteblatt international 115(10) (2018) 169.
[3] D. Grölz, S. Hauch, M. Schlumpberger, K. Guenther, T. Voss, M. Sprenger-Haussels, U. Oelmüller, Liquid biopsy preservation solutions for standardized pre-analytical workflows—venous whole blood and plasma, Current pathobiology reports 6(4) (2018) 275-286.
[4] S. Salvi, F. Martignano, C. Molinari, G. Gurioli, D. Calistri, U. De Giorgi, V. Conteduca, V. Casadio, The potential use of urine cell free DNA as a marker for cancer, Expert review of molecular diagnostics 16(12) (2016) 1283-1290.
[5] S. Jain, S.Y. Lin, W. Song, Y.-H. Su, Urine-based liquid biopsy for nonurological cancers, Genetic testing and molecular biomarkers 23(4) (2019) 277-283.
[6] K. Aro, F. Wei, D.T. Wong, M. Tu, Saliva liquid biopsy for point-of-care applications, Frontiers in public health 5 (2017) 77.
[7] J. Cheng, T. Nonaka, D.T. Wong, Salivary exosomes as nanocarriers for cancer biomarker delivery, Materials 12(4) (2019) 654.
[8] O.A. Sindeeva, R.A. Verkhovskii, M. Sarimollaoglu, G.A. Afanaseva, A.S. Fedonnikov, E.Y. Osintsev, E.N. Kurochkina, D.A. Gorin, S.M. Deyev, V.P. Zharov, New frontiers in diagnosis and therapy of circulating tumor markers in cerebrospinal fluid in vitro and in vivo, Cells 8(10) (2019) 1195.
[9] C. Rolfo, A. Russo, Liquid biopsy for early stage lung cancer moves ever closer, Nature reviews clinical oncology 17(9) (2020) 523-524.
[10] K. Kim, C. Park, D. Kwon, D. Kim, M. Meyyappan, S. Jeon, J.-S. Lee, Silicon nanowire biosensors for detection of cardiac troponin I (cTnI) with high sensitivity, Biosensors and bioelectronics 77 (2016) 695-701.
[11] J.H. Chua, R.-E. Chee, A. Agarwal, S.M. Wong, G.-J. Zhang, Label-free electrical detection of cardiac biomarker with complementary metal-oxide semiconductor-compatible silicon nanowire sensor arrays, Analytical chemistry 81(15) (2009) 6266-6271.
[12] H. Li, C. Jing, J. Wu, J. Ni, H. Sha, X. Xu, Y. Du, R. Lou, S. Dong, J. Feng, Circulating tumor DNA detection: A potential tool for colorectal cancer management, Oncology letters 17(2) (2019) 1409-1416.
[13] L. Keller, Y. Belloum, H. Wikman, K. Pantel, Clinical relevance of blood-based ctDNA analysis: Mutation detection and beyond, British journal of cancer 124(2) (2021) 345-358.
[14] R. Dahm, Friedrich miescher and the discovery of DNA, Developmental biology 278(2) (2005) 274-288.
[15] J.D. Watson, F.H. Crick, Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid, Nature 171(4356) (1953) 737-738.
[16] J. Špaček, M. Fojta, Electroanalysis of unnatural base pair content in plasmid DNA generated in a semi-synthetic organism, Electrochimica acta 364 (2020) 137298.
[17] R. Wing, H. Drew, T. Takano, C. Broka, S. Tanaka, K. Itakura, R.E. Dickerson, Crystal structure analysis of a complete turn of B-DNA, Nature 287(5784) (1980) 755-758.
[18] C.O. Pabo, R.T. Sauer, Protein-DNA recognition, Annual review of biochemistry 53(1) (1984) 293-321.
[19] A. Leslie, S. Arnott, R. Chandrasekaran, R. Ratliff, Polymorphism of DNA double helices, Journal of molecular biology 143(1) (1980) 49-72.
[20] A. Herbert, A. Rich, The biology of left-handed Z-DNA (∗), Journal of biological chemistry 271(20) (1996) 11595-11598.
[21] S. Harteis, S. Schneider, Making the bend: DNA tertiary structure and protein-DNA interactions, International journal of molecular sciences 15(7) (2014) 12335-12363.
[22] K. Zhang, J. Hodge, A. Chatterjee, T.S. Moon, K.M. Parker, Duplex structure of double-stranded RNA provides stability against hydrolysis relative to single-stranded RNA, Environmental science and technology 55(12) (2021) 8045-8053.
[23] P.G. Higgs, RNA secondary structure: physical and computational aspects, Quarterly reviews of biophysics 33(3) (2000) 199-253.
[24] V. Ambros, The functions of animal microRNAs, Nature 431(7006) (2004) 350-355.
[25] J. Seo, D. Jin, C.-H. Choi, H. Lee, Integration of microRNA, mRNA, and protein expression data for the identification of cancer-related microRNAs, PLoS one 12(1) (2017) e0168412.
[26] P.H. Olsen, V. Ambros, The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation, Developmental biology 216(2) (1999) 671-680.
[27] F.J. Slack, M. Basson, Z. Liu, V. Ambros, H.R. Horvitz, G. Ruvkun, The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor, Molecular cell 5(4) (2000) 659-669.
[28] D.P. Bartel, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell 116(2) (2004) 281-297.
[29] G.L. Sen, H.M. Blau, Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies, Nature cell biology 7(6) (2005) 633-636.
[30] M.A. Valencia-Sanchez, J. Liu, G.J. Hannon, R. Parker, Control of translation and mRNA degradation by miRNAs and siRNAs, Genes & development 20(5) (2006) 515-524.
[31] G. Badis, C. Saveanu, M. Fromont-Racine, A. Jacquier, Targeted mRNA degradation by deadenylation-independent decapping, Molecular cell 15(1) (2004) 5-15.
[32] C.-H. Liu, S. Huang, W.R. Britton, J. Chen, MicroRNAs in vascular eye diseases, International journal of molecular sciences 21(2) (2020) 649.
[33] D. Li, S. Song, C. Fan, Target-responsive structural switching for nucleic acid-based sensors, Accounts of chemical research 43(5) (2010) 631-641.
[34] S. Song, Y. Qin, Y. He, Q. Huang, C. Fan, H.-Y. Chen, Functional nanoprobes for ultrasensitive detection of biomolecules, Chem Soc Rev 39(11) (2010) 4234-4243.
[35] J. Wang, Electrochemical biosensors: towards point-of-care cancer diagnostics, Biosensors and bioelectronics 21(10) (2006) 1887-1892.
[36] G. Johansson, D. Andersson, S. Filges, J. Li, A. Muth, T.E. Godfrey, A. Ståhlberg, Considerations and quality controls when analyzing cell-free tumor DNA, Biomolecular detection and quantification 17 (2019) 100078.
[37] N. An, K. Li, Y. Zhang, T. Wen, W. Liu, G. Liu, L. Li, W. Jin, A multiplex and regenerable surface plasmon resonance (MR-SPR) biosensor for DNA detection of genetically modified organisms, Talanta 231 (2021) 122361.
[38] S. Rafique, M. Idrees, H. Bokhari, A. Bhatti, Ellipsometric-based novel DNA biosensor for label-free, real-time detection of Bordetella parapertussis, Journal of biological physics 45(3) (2019) 275-291.
[39] I. Smyrlaki, M. Ekman, A. Lentini, N. Rufino de Sousa, N. Papanicolaou, M. Vondracek, J. Aarum, H. Safari, S. Muradrasoli, A.G. Rothfuchs, Massive and rapid COVID-19 testing is feasible by extraction-free SARS-CoV-2 RT-PCR, Nature communications 11(1) (2020) 1-12.
[40] Y. Cao, M. Yu, G. Dong, B. Chen, B. Zhang, Digital PCR as an emerging tool for monitoring of microbial biodegradation, Molecules 25(3) (2020) 706.
[41] C. Bass, D. Nikou, J. Vontas, M.J. Donnelly, M.S. Williamson, L.M. Field, The vector population monitoring tool (VPMT): high-throughput DNA-based diagnostics for the monitoring of mosquito vector populations, Malaria research and treatment 2010 (2010).
[42] C.J. Smith, A.M. Osborn, Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology, FEMS microbiology ecology 67(1) (2009) 6-20.
[43] B.N. Johnson, R. Mutharasan, Biosensor-based microRNA detection: techniques, design, performance, and challenges, Analyst 139(7) (2014) 1576-1588.
[44] H. Zhang, Z. Yan, X. Wang, M. Gaňová, H. Chang, S.a. Laššáková, M. Korabecna, P. Neuzil, Determination of Advantages and Limitations of qPCR Duplexing in a Single Fluorescent Channel, Acs omega 6(34) (2021) 22292-22300.
[45] E. Helmerhorst, D.J. Chandler, M. Nussio, C.D. Mamotte, Real-time and label-free bio-sensing of molecular interactions by surface plasmon resonance: a laboratory medicine perspective, The clinical biochemist reviews 33(4) (2012) 161.
[46] A. Gao, X. Yang, J. Tong, L. Zhou, Y. Wang, J. Zhao, H. Mao, T. Li, Multiplexed detection of lung cancer biomarkers in patients serum with CMOS-compatible silicon nanowire arrays, Biosensors and bioelectronics 91 (2017) 482-488.
[47] N. Lu, A. Gao, P. Dai, S. Song, C. Fan, Y. Wang, T. Li, CMOS‐compatible silicon nanowire field‐effect transistors for ultrasensitive and label‐free microRNAs sensing, Small 10(10) (2014) 2022-2028.
[48] J. He, J. Zhu, C. Gong, J. Qi, H. Xiao, B. Jiang, Y. Zhao, Label-free direct detection of miRNAs with poly-silicon nanowire biosensors, Microrna detection and target identification 10(12) (2015) e0145160.
[49] A. Ganguli, Y. Watanabe, M.T. Hwang, J.-C. Huang, R. Bashir, Robust label-free microRNA detection using one million ISFET array, Biomedical microdevices 20(2) (2018) 1-10.
[50] C.-S. Lee, S.K. Kim, M. Kim, Ion-sensitive field-effect transistor for biological sensing, Sensors 9(9) (2009) 7111-7131.
[51] S. Kalra, M.J. Kumar, A. Dhawan, Reconfigurable FET biosensor for a wide detection range and electrostatically tunable sensing response, IEEE sensors journal 20(5) (2019) 2261-2269.
[52] M.-Y. Shen, B.-R. Li, Y.-K. Li, Silicon nanowire field-effect-transistor based biosensors: From sensitive to ultra-sensitive, Biosensors and bioelectronics 60 (2014) 101-111.
[53] Z. Li, Y. Chen, X. Li, T. Kamins, K. Nauka, R.S. Williams, Sequence-specific label-free DNA sensors based on silicon nanowires, Nano letters 4(2) (2004) 245-247.
[54] J.Y.-S. Wu, C.-H. Lin, M.-H. Feng, C.-H. Chen, P.-C. Su, P.-W. Yang, J.-M. Zheng, C.-W. Fu, Y.-S. Yang, Preparation of silicon nanowire field-effect transistor for chemical and biosensing applications, Journal of visualized experiments (110) (2016) e53660.
[55] H.-W. Chien, H.-Y. Lin, C.-Y. Tsai, T.-Y. Chen, W.-N. Chen, Superhydrophilic coating with antibacterial and oil-repellent properties via NaIO4-triggered polydopamine/sulfobetaine methacrylate Polymerization, Polymers 12(9) (2020) 2008.
[56] A. Dekker, K. Reitsma, T. Beugeling, A. Bantjes, J. Feijen, W. Van Aken, Adhesion of endothelial cells and adsorption of serum proteins on gas plasma-treated polytetrafluoroethylene, Biomaterials 12(2) (1991) 130-138.
[57] H. Ma, O. Acton, D.O. Hutchins, N. Cernetic, A.K.-Y. Jen, Multifunctional phosphonic acid self-assembled monolayers on metal oxides as dielectrics, interface modification layers and semiconductors for low-voltage high-performance organic field-effect transistors, Physical chemistry chemical physics 14(41) (2012) 14110-14126.
[58] R. Chang, S. Asatyas, G. Lkhamsuren, M. Hirohara, E.A.Q. Mondarte, K. Suthiwanich, T. Sekine, T. Hayashi, Water near bioinert self-assembled monolayers, Polymer journal 50(8) (2018) 563-571.
[59] A.-J. Truyens, J. Vekeman, F. Tielens, A subtle balance between interchain interactions and surface reconstruction at the origin of the alkylthiol/Au (111) self-assembled monolayer geometry, Surface science 696 (2020) 121597.
[60] L. Zhou, J. Zhang, E. DiGiammarino, A. Kavishwar, B. Yan, C. Chumsae, P.M. Ihnat, D. Powers, J. Harlan, W.B. Stine, PULSE SPR: a high throughput method to evaluate the domain stability of antibodies, ACS publications 90(20) (2018) 12221-12229.
[61] C.-A. Vu, H.-Y. Lai, C.-Y. Chang, H.W.-H. Chan, W.-Y. Chen, Optimizing surface modification of silicon nanowire field-effect transistors by polyethylene glycol for MicroRNA detection, Colloids and surfaces B: Biointerfaces 209 (2022) 112142.
[62] M. Kind, C. Wöll, Organic surfaces exposed by self-assembled organothiol monolayers: Preparation, characterization, and application, Progress in surface science 84(7-8) (2009) 230-278.
[63] G. Olah, Organized Monolayers by Adsorption, I. Formation and Structure of Oleophobic Mixed Monolayers on Solid Surfaces, Journal of the american chemical society (1980) 92-98.
[64] G. Capecchi, M.G. Faga, G. Martra, S. Coluccia, M.F. Iozzi, M. Cossi, Adsorption of CH3 COOH on TiO2: IR and theoretical investigations, Research on chemical intermediates volume 33(3) (2007) 269-284.
[65] G.M. Wang, W.C. Sandberg, S.D. Kenny, Density functional study of a typical thiol tethered on a gold surface: ruptures under normal or parallel stretch, Nanotechnology 17(19) (2006) 4819.
[66] S. Zürcher, D. Wäckerlin, Y. Bethuel, B. Malisova, M. Textor, S. Tosatti, K. Gademann, Biomimetic surface modifications based on the cyanobacterial iron chelator anachelin, Journal of american chemical society 128(4) (2006) 1064-1065.
[67] H.-W. Chien, T.-H.J.E.P.J. Chiu, Stable N-halamine on polydopamine coating for high antimicrobial efficiency, Eur Polym J 130 (2020) 109654.
[68] 黃俊仁, 發展仿生雙離子表面自組裝材料, 化工 67(3) (2020) 73-81.
[69] J.M. Harris, Introduction to biotechnical and biomedical applications of poly (ethylene glycol), Poly (ethylene glycol) Chemistry, Springer1992, pp. 1-14.
[70] V. Hynninen, L. Vuori, M. Hannula, K. Tapio, K. Lahtonen, T. Isoniemi, E. Lehtonen, M. Hirsimäki, J.J. Toppari, M. Valden, Improved antifouling properties and selective biofunctionalization of stainless steel by employing heterobifunctional silane-polyethylene glycol overlayers and avidin-biotin technology, Scientific reports 6(1) (2016) 1-12.
[71] C.-A. Vu, W.-Y. Chen, Y.-S. Yang, H.W.-H. Chan, Improved biomarker quantification of silicon nanowire field-effect transistor immunosensors with signal enhancement by RNA aptamer: Amyloid beta as a case study, Sensors and actuators B 329 (2021) 129150.
[72] S. Carrara, L. Benini, V. Bhalla, C. Stagni, A. Ferretti, A. Cavallini, B. Riccò, B. Samorì, New insights for using self-assembly materials to improve the detection stability in label-free DNA-chip and immuno-sensors, Biosensors and bioelectronics 24(12) (2009) 3425-3429.
[73] S. Carrara, A. Cavallini, Y. Leblebici, G. De Micheli, V. Bhalla, F. Valle, B. Samorì, L. Benini, B. Riccò, I. Vikholm-Lundin, Capacitance DNA bio-chips improved by new probe immobilization strategies, Microelectronics journal 41(11) (2010) 711-717.
[74] O. Liubysh, A. Vlasiuk, S. Perepelytsya, Structuring of counterions around DNA double helix: a molecular dynamics study, ArXiv (2015).
[75] F. Mocci, A. Laaksonen, Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”, Soft matter 8(36) (2012) 9268-9284.
[76] C. Schildkraut, S. Lifson, Dependence of the melting temperature of DNA on salt concentration, Biopolymers 3(2) (1965) 195-208.
[77] A. Purwidyantri, T. Domingues, J. Borme, J.R. Guerreiro, A. Ipatov, C.M. Abreu, M. Martins, P. Alpuim, M. Prado, Influence of the electrolyte salt concentration on DNA detection with graphene transistors, Biosensors 11(1) (2021) 24.
[78] N. Gao, W. Zhou, X. Jiang, G. Hong, T.-M. Fu, C.M. Lieber, General strategy for biodetection in high ionic strength solutions using transistor-based nanoelectronic sensors, Nano letters 15(3) (2015) 2143-2148.
[79] A. Poghossian, A. Cherstvy, S. Ingebrandt, A. Offenhäusser, M.J. Schöning, Possibilities and limitations of label-free detection of DNA hybridization with field-effect-based devices, Sensors and actuators B 111 (2005) 470-480.
[80] K.B. Parizi, X. Xu, A. Pal, X. Hu, H. Wong, ISFET pH sensitivity: counter-ions play a key role, Scientific reports 7(1) (2017) 1-10.
[81] S.P. White, K.D. Dorfman, C.D. Frisbie, Label-free DNA sensing platform with low-voltage electrolyte-gated transistors, Analytical chemistry 87(3) (2015) 1861-1866.
[82] Y.-T. Lin, A. Purwidyantri, J.-D. Luo, C.-C. Chiou, C.-M. Yang, C.-H. Lo, T.-L. Hwang, T.H. Yen, C.-S. Lai, Programming a nonvolatile memory-like sensor for KRAS gene sensing and signal enhancement, Biosensors and bioelectronics 79 (2016) 63-70.
[83] B. Choi, J. Lee, J. Yoon, J.-H. Ahn, T.J. Park, D.M. Kim, D.H. Kim, S.-J. Choi, TCAD-based simulation method for the electrolyte–insulator–semiconductor field-effect transistor, IEEE transactions on electron devices impact 62(3) (2015) 1072-1075.
[84] K. Fu, J.W. Seo, V. Kesler, N. Maganzini, B.D. Wilson, M. Eisenstein, B. Murmann, H.T. Soh, Accelerated electron transfer in nanostructured electrodes improves the sensitivity of electrochemical biosensors, Advanced science 8(23) (2021) 2102495.
[85] J. Sun, Y. Liu, Matrix effect study and immunoassay detection using electrolyte-gated graphene biosensor, Micromachines 9(4) (2018) 142. |