參考文獻 |
[1] C. W. Wolgemuth. Collective swimming and the dynamics of baterial turbulence. Biophy. J., 95:1564–1574, 2008.
[2] P. Friedl, Y. Hegerfeldt, and M. Tusch. Collective cell migration in morphogenesis and cancer. Int. J. Dev. Biol., 48(5-6):441–449, 2004.
[3] P. Friedl and D. Gilmour. Collective cell migration in morphogenesis, regeneration and cancer. Nat. Rev., 10:445–457, 2009.
[4] M. Perez-Moreno, C. Jamora, and E. Fuchs. Sticky business: Orchestrating cellular signals at adherens junctions. Cell, 4:535–548, 2003.
[5] J. B. Reece, L. A. Urry, M. L. Cain, S. A. Wasserman, P. V. Minorsky, and R. B. Jackson. Campbell Biology (9th Edition). Benjamin Cummings, 2010.
[6] T. Lecuit and P. F. Lenne. Cell surface mechanics and the control of cell shape, tissue patterns and morphogenesis. Nat. Rev. Mol. Cell Biol., 8:633–644, 2007.
[7] T. Bittig, O. Wartlick, A. Kicheva, M. Gonzalez-Gaitan, and Frank Julicher. Dynamics of anisotropic tissue growth. New J. Phys., 10:063001, 2008.
[8] A. Z. Rizvi and M. H. Wong. Epithelial stem cells and their niche: There is no place like home. Stem Cells, 23:150–165, 2005.
[9] F. M. Watt and B. L. M. Hogan. Out of eden: Stem cells and their niches. Science, 287:1427–1430, 2000.
[10] K. A. Moore and I. R. Lemischka. Stem cell and their niches. Science, 311:1880–1885, 2006.
[11] I. H. Smart. Location and orientation of mitotic figures in the developing mouse olfactory epithelium. J. Anat., 109:243–251, 1971.
[12] A. L. Calof, J. S. Mumm, P. C. Rim, and J. Shou. The neuronal stem cell of the olfactory epithelium. J. Neurobiol., 36(2):190–205, 1998.
[13] I. Bonnet, P. Marcq, F. Bosveld, L. Felter, Y. Bellaiche, and F. Graner. Mechanical state, material properties and continuous description of an epithelial tissue. J. R. Soc. Int., 9:2614–2623, 2012.
[14] R. A. Foty, G. Forgacs, C. Pfleger, and M. S. Steinberg. Liquid properties of embryonic tissues: Measurement of interfacial tensions. Phys. Rev. Lett., 72:2298–2301, 1994.
[15] G. Forgacs, R. A. Foty, Y. Shafrir, and M. S. Steinberg. Viscoelastic prperties of living embryonic tissues: A quantitative study. Biophys. J., 74:2227–2234, 1994.
[16] Richard A. L. Jones. Soft Condensed Matter. Oxford University Press, 2002.
[17] M. Lambert, O. Thoumine, J. Brevier, D. Choquet, D. Riveline, and R.-M. Mege. Mechanical state, material properties and continuous description of an epithelial tissue. Exp. Cell Res., 313:4024–4040, 2007.
[18] J. Ranft, M. Basan, J. Elgeti, J.-F. Joanny, J. Prost, and F. Julicher. Fluidization of tissues by cell division and apoptosis. Proc. Nat. Acad. Sci. USA, 107(49):20863–20868, 2010.
[19] R. A. Weinberg. The Biology of Cancer. Garland Science, 2007.
[20] T. Bittig, O. Wartlick, M. Gonzalez-Gaitan, and F. Julicher. Quantication of growth asymmetries in developing epithelia. Eur. Phys. J. E., 30:93–99, 2009.
[21] H. M. Bryne, J. R. King, D. L. S. McElwain, and L. Preziosi. A two-phase model of solid tumor growth. Appl. Math. Lett., 16:567–573, 2003.
[22] M. Basan, T. Risler, J.-F. Joanny, X. Sastre-Garau, and J. Prost. Homeostatic competition drives tumor growth and metastasis nucleation. HFSP J., 3(4):265–272, 2009.
[23] M. Basan, J.-F. Joanny, J. Prost, and T. Risler. Undulation instability of epithelial tissues. Phys. Rev. Lett., 106:158101, 2011.
[24] T. Risler and M. Basan. Morphological instabilities of stratified epithelia: A mechanical instability in tumor formation. New J. Phys., 15:065011, 2013.
[25] K. Takahashi and S. Yamanaka. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell, 126:663–676, 2006.
[26] K. Takahashi, K. Tanabe, M. Ohnuki, M. Naruta, T. Ichisaka, K. Tomoda, and S. Yamanaka. Induction of pluripotent stem cells from adult human bibroblasts by defined
factors. Cell, 131:861–872, 2007.
[27] T. Enver, M. Pera, C. Peterson, and P. W. Andrews. Stem cell states, fates, and the rules of attraction. Cell Stem Cell, 4:387–397, 2009.
[28] B. Reizes. Classical dentritic cells as a unique immuse cell lineage. J. Exp. Med., 209(6):1053–1056, 2012.
[29] A. D. Lander, K. K. Gokoffski, F. Y.-M. Wan, Q. Nie, and A. L. Calof. Cell lineages and the logic of proliferative control. PLoS Biol., 7:0084–0100, 2009.
[30] M. Loeffler and I. Roeder. Tissue stem cells: Definition, plasticity, heterogenity, selforganization and models - a conceptual approach. Cells Tissue Organs, 171:8–26, 2002.
[31] C. S. Potten. The epidermal proliferative unit: The possible role of the central basal cell. Cell Tissue Kinet, 7:77–88, 1974.
[32] E. Clayton, D. P. Doupe, A. M. Klein, D. J. Winton, and B. D. Simons. A single type of progenitor cell maintains normal epidermis. Nature, 446:185–189, 2007.
[33] H. J. Snippert, L. G. van der Flier, T. Sato, J. H. van Es, M. van der Born, C. Kroon-Veenboer, N. Barker, A. M. Klein, J. van Rheenen, B. D. Simons, and H. Clevers. Intestinal crypt homeostasis results from neutral competition between symmetrically dividing lgr5 stem cells. Cell, 143(1):134–144, 2010.
[34] A. M. Klein, D. P. Doupe, P. H. Jones, and B. D. Simons. Kinetics of cell division in epidermis maintenance. PRE, 76:021910, 2007.
[35] A. M. Klein and B. D. Simons. Universal patterns of stem cell fate in cycling adult tissues. Development, 138:3103–3111, 2011.
[36] C.-S. Chou, W.-C. Lo, K. K. Gokoffski, Y.-T. Zhang, F. Y.-M. Wan, A. D. Lander, A. L. Calof, and Q. Nie. Spatial dynamics of multistage cell lineages in tissue stratification. Biophy. J., 99:3145–3154, 2010.
[37] W.-C. Lo, C.-S. Chou, K. K. Gokoffski, F. Y.-M. Wan, A. D. Lander, A. L. Calof, and Q. Nie. Feedback regulation in multistage cell lineages. Math. Biosci. Eng., 6(1):59–82, 2009.
[38] H. H. Wu, S. Ivkovic, R. C. Murray, S. Jaramillo, K. M. Lyons, J. E. Johnson, and A. L. Calof. Autoregulation of neurogenesis by gdf11. Neuron, 37:197–207, 2003.
[39] C. K. Beites, S. Kawauchi, C. E. Crocker, and A. L. Calof. Identification and molecular regulation of neural stem cells in the olfactory epithelium. Exp. Cell Res., 306:309–316, 2005.
[40] K. K. Gokoffski, H. H. Wu, C. L. Beites, J. Kim, E. J. Kim, M. M. Matzuk, J. E. Johnson, A. D. Lander, and A. L. Calof. Activin and gdf11 collaborate in feedback control of neuroepethelial stem cell porliferation and rate. Developemnt, 138(19):4131–4142, 2011.
[41] D. Hnahan and R. A. Weinberg. The hallmarks of cancer. Cell, 100:57–70, 2000.
[42] H. Hayflict. The limited in vitro lifetime of human diploid cell strains. Exp. Cell Res., 37:614–636, 1965.
[43] H. Clevers. The cancer stem cell: Premises, promises and challenges. Nat. Med., 17:313–319, 2011.
[44] T. Boveri. The Origin of Maglignant Tumors. Baltimore, MD Williams & Wikins, 1929.
[45] A. M. Soto and C. Sonnenschein. The tissue organization field theory of cancer: A testable replacement for the somatic mutation theory. Bioessays, 33:332–340, 2011.
[46] L. Chanson, D. Brownfield, J. C. Garbe, I. Kuhn, M. R. Stampfer, M. J. Bissell, and M. A. LaBarge. Self-organization is a dynamics and lineage-intrinsic property of mammary epithelial cells. Proc. Nat. Acad. Sci. USA, 108:3264–3269, 2010.
[47] D. E. Ingber. Cacner as a disease of epithelial-mesenchymal interactions and extracellular matrix regulation. Differentiation, 70:547–560, 2002.
[48] I. P. M. Tomlinson and W. F. Bodmer. Failure of programed cell death and differentiation as cause of tumors: Some simple mathematical models. Proc. Nat. Acad. Sci. USA, 92:11130–11134, 1995.
[49] P. B. Warren. Cells, cancer, and rare events: Homeostatic metastability in stochastic nonlinear dynamical models of skin cell proliferation. Phys. Rev. E, 80:030903, 2009.
[50] I. A. Rodriguez-Brenes, N. L. Komarova, and D. Wodarz. Evolutionary dynamics of feedback escape and the development of stem-cell-driven cancers. Proc. Nat. Acad. Sci. USA, 108(47):18983–18988, 2011.
[51] J.-Y. Chang and P.-Y. Lai. Uncontrolled growth resulting from dedifferentiation in a skin cell proliferation model. Phys. Rev. E, 85:041926, 2012.
[52] A. Vasilyev, Y. Liu, S. Mudumana, and S. Mangos. Collective cell migration drives morphogenesis of the kidney nephron. Development, 137:1407–1420, 2009.
[53] R. M. H. Merks and J. M. Glazier. A cell-centered approach to development biology. Phys. A, 352:113–130, 2005.
[54] M. Kuchen and A. C. Newell. Fringerprint formation. J. Ther. Biol., 235:71–83, 2005.
[55] B. I. Shraiman. Mechanical feedback as a possible regulator of tissue growth. Proc. Nat. Acad. Sci. USA, 102(9):3318–3323, 2005.
[56] L. Hufnagel, A. A. Teleman, H. Rouault, S. M. Cohen, and B. I. Shraiman. On the mechanism of wing size determination in fly developemnt. Proc. Nat. Acad. Sci. USA, 104(10):3835–3840, 2006.
[57] E. Hannezo, J. Prost, and J.-F. Joanny. Instabilities of monolayered epithelia: Shape and structure of villi and crypts. Phys. Rev. Lett., 107:078104, 2011.
[58] E. Hannezo, J. Prost, and J.-F. Joanny. Mechanical instabilities of biological tubes. Phys. Rev. Lett., 109:018101, 2012.
[59] E. Sahai. Illustrating the metastatic process. Nat. Rev. Cacner, 1910:737–749, 2007.
[60] T. Reya, S. J. Morisson, M. E. Clarke, and I. L. Weissman. Stem cells, cancer, and cancr stem cells. Nature, 414:105–111, 2001.
[61] A. D. Lander. The ’stem cell’ concept: Is it holding us back? J. Biol., 8:70, 2009.
[62] D. Zipori. The nature of stem cells: State rather than entity. Nat. Rev. Genet., 5:873–878, 2004.
[63] M. W. Maffini, A. M. Soto, J. M. Calabro, and A. A. Ucci. The stroma as a crucial target in rat mammary gland carcinogenesis. J. Cell Sci., 117:1495–1502, 2004.
[64] J. Ovadia and Q. Nie. Stem cell niche structure as an inherent cause of undulating epithelial morphogenesis. Biophy. J., 104:237–246, 2013.
[65] D. E. Ingber. Mechanical control of tissue growth: Function follows form. Proc. Nat. Acad. Sci. USA, 102(33):11571–11572, 2005.
[66] C. M. Nelson, R. P. Jean, J. L. Tan, W. F. Liu, N. J. Sniadecki, A. A. Spector, and C. S. Chen. Emergent patterns of growth controlled by multicellular form and mechanics. Proc. Nat. Acad. Sci. USA, 102(33):11594–11599, 2005.
[67] G. Cheng, J. Tse, R. K. Jain, and L. L. Munn. Micro-enviromental mechanical stress controls tumor sphroid size and morphogenesis by supressing proliferation and inducing apoptosis in cancer cells. PLoS one, 4(2):e4632, 2009.
[68] F. Montel, M. Delarue, J. Elgeti, L. Malaguin, M. Basan, T. Risler, B. Cabane, D. Vignjevic, J. Prost, G. Cappello, and J.-F. Joanny. Stress clamp experiments on multicellular tumor spheroids. Phys. Rev. Lett., 107(18):188102, 2011.
[69] A. J. Engler, S. Sen, H. L. Sweeney, and D. E. Discher. Matrix elasticity directs stem cell lineage specification. Cell, 126(4):677–689, 2006.
[70] B. Li, F. Li, K. M. Puskar, and J. H.-C. Wang. Spatial patterning of cell proliferation and differentiation depends on mechanical stress magnitude. J. Biomechanics, 42:1622–1627, 2009.
[71] Steven H. Strogatz. Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry, and Engineering. Westview Press, 2001.
[72] Uri Alon. An Introduction to System Biology: Design Principles of Biological Circuits. Chapman and Hall/CRC, 2006.
[73] Sze-Bi Hsu. Ordinary Differential Equations with Applications. World Scientific Pub Co Inc, 2006.
[74] G. T. Mase, R. E. Smelser, and G. E. Mase. Continuum Mechanics for Engineers (3rd edition). CRC Press, 2009.
[75] O. Gonzalez and A. M. Stuart. A First Course in Continuum Mechanics. Cambridge University Press, 2008.
[76] Lee Segel and G. H. Handelman. Mathematics Applied to Continuum Mechanics. Society for Industrial and Applied Mathematics, 2007.
[77] Willians E. Boyce and Richard C. Diprima. Elementary Differential Equations and Boundary Conditions (9th Edition). Wiley, 2008.
[78] A. D. Lander, Q. Nie, and F.-Y. Wan. Do morphogen gradients arise by diffusion? Dev. Cell, 2(6):785–796, 2002.
[79] F. Crick. Diffusion in embryogenesis. Nature, 225:420–422, 1970.
[80] M. K. DeHamer, J. L. Guevara, K. Hannon, and A. L. Calof B. B. Olwin. Genesis of olfactory receptor neurons in vitro: Regulation of porgenitor cell divisions by fibroblast growth factors. Neurons, 13:1083–1097, 1994.
[81] J. Ranft, J. Prost, F. Julicher, and J.-F. Joanny. Tissue dynamics with permeation. Eur. Phys. J. E. Soft Matter, 35(6):46, 2012.
[82] L. D. Landau, L. P. Pitaevskii, and E. M. Lifschitz. Theory of Elasticity (3rd edition). Elservier Butterworth-Heinemann, 1986.
[83] U. S. Schwarz and S. A. Safran. Elastic interactions of cells. Phys. Rev. Lett., 88:048102, 2002.
[84] I. B. Bischofs, S. A. Safran, and U. S. Schwarz. Elastic interactions of active cells with soft materials. Phys. Rev. E, 69:021911, 2004.
[85] U. S. Schwarz, N. Q. Balaban amd D. Riveline, A. Bershadsky, B. Geiger, and S. A. Safran. Calculation of forces at focal adhesions from elastic substrate data: the effect of localized force and the need for regularization. Biophys. J., 83(3):1380–1394, 2002.
[86] D. M. Bryant and K. E. Mostov. From cells to organs: Building polarizied tissue. Nat. Rev. Mol. Biol., 9(11):887–901, 2008.
[87] M. Thery, A. Jimenez-Dalmaroni, V. Racine, M. Bornens, and F. Julicher. Experimental and theoretical study of mitotic spindle orientation. Nature, 447:493–497, 2007.
[88] B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walters. Molecular Biology of Cell (5th Edition). Garland Science, 2007.
[89] F. H. Harlow and J. E. Welch. Numerical calculation of time dependent viscous incompressible flow of fluid with free surface. Phys. Fluids, 8:2182–2189, 1965.
[90] D. D. Joseph. Domain perturbations: The higher order theory of infinitesmal water waves. Arch. Rational Mech. Anal., 51:295–303, 1973. |