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Chapter one:
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5.Yoshimura A, Suzuki M, Sakaguchi R, Hanada T, Yasukawa H. SOCS, Inflammation, and autoimmunity. Front Immunol 2012; 3: 20.
6.Masood KI, Rottenberg ME, Salahuddin N, Irfan M, Rao N, Carow B, et al. Expression of M. tuberculosis-induced suppressor of cytokine signaling (SOCS) 1, SOCS3, FoxP3 and secretion of IL-6 associates with differing clinical severity of tuberculosis. BMC Infect Dis 2013; 13: 13.
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25.Letellier E, Haan S. SOCS2: physiological and pathological functions. Front Biosci 2016; 8: 189-204.
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27.McCormick SM, Heller NM. Regulation of macrophage, dendritic cell, and microglial phenotype and function by the SOCS proteins. Front Immunol 2015; 6: 549.
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Chapter two:
1.Chang FY, Chou JH, Chuang JH, Chen YH, Liu DP, Chen CH, et al. Taiwan Tuberculosis Control Report 2013. Taipei: Centers for Disease Control, Department of Health, R.O.C (Taiwan); 2014.
2.Khalilullah SA, Harapan H, Hasan NA, Winardi W, Ichsan I, Mulyadi M. Host genome polymorphisms and tuberculosis infection: What we have to say? Egypt J Chest Dis Tuberc 2014; 63: 173-185.
3.Hsu YH, Chen CW, Sun HS, Jou R, Lee JJ, Su IJ. Association of NRAMP 1 gene polymorphism with susceptibility to tuberculosis in Taiwanese aboriginals. J Formos Med Assoc 2006; 105: 363-369.
4.Lee SW, Chuang TY, Huang HH, Lee KF, Chen TT, Kao YH, et al. Interferon gamma polymorphisms associated with susceptibility to tuberculosis in a Han Taiwanese population. J Microbiol Immunol Infect 2015; 48: 376-380.
5.Qi H, Sun L, Wu X, Jin Y, Xiao J, Wang S, et al. Toll-like receptor 1 (TLR1) Gene SNP rs5743618 is associated with increased risk for tuberculosis in Han Chinese children. Tuberculosis (Edinb) 2015; 95: 197-203.
6.Starr R, Willson TA, Viney EM, Murray LJ, Rayner JR, Jenkins BJ, et al. A family of cytokine-inducible inhibitors of signalling. Nature 1997; 387: 917-921.
7.Yoshimura A. Negative regulation of cytokine signaling. Clin Rev Allergy Immunol 2005; 28: 205-220.
8.Puhr M, Santer FR, Neuwirt H, Susani M, Nemeth JA, Hobisch A, et al. Down-regulation of suppressor of cytokine signaling-3 causes prostate cancer cell death through activation of the extrinsic and intrinsic apoptosis pathways. Cancer Res 2009; 69: 7375-7384.
9.Neuwirt H, Puhr M, Cavarretta IT, Mitterberger M, Hobisch A, Culig Z. Suppressor of cytokine signalling-3 is up-regulated by androgen in prostate cancer cell lines and inhibits androgen-mediated proliferation and secretion. Endocr Relat Cancer 2007; 14: 1007-1019.
10.Krebs DL, Hilton DJ. SOCS proteins: negative regulators of cytokine signaling. Stem Cells 2001; 19: 378-387.
11.Marine JC, McKay C, Wang D, Topham DJ, Parganas E, Nakajima H, et al. SOCS3 is essential in the regulation of fetal liver erythropoiesis. Cell 1999; 98: 617-627.
12.Emanuelli B, Peraldi P, Filloux C, Sawka-Verhelle D, Hilton D, Van Obberghen E. SOCS-3 is an insulin-induced negative regulator of insulin signaling. J Biol Chem 2000; 275: 15985-15991.
13.Handy JA, Saxena NK, Fu P, Lin S, Mells JE, Gupta NA, et al: Adiponectin activation of AMPK disrupts leptin-mediated hepatic fibrosis via suppressors of cytokine signaling (SOCS-3). J Cell Biochem 2010; 110: 1195-1207.
14.Shi H, Tzameli I, Bjørbaek C, Flier JS. Suppressor of cytokine signaling 3 is a physiological regulator of adipocyte insulin signaling. J Biol Chem 2004; 279: 34733-34740.
15.Fleenor D, Arumugam R, Freemark M. Growth hormone and prolactin receptors in adipogenesis: STAT-5 activation, suppressors of cytokine signaling, and regulation of insulin-like growth factor I. Horm Res 2006; 66: 101-110.
16.Greenhalgh CJ, Alexander WS. Suppressors of cytokine signalling and regulation of growth hormone action. Growth Horm IGF Res 2004; 14: 200-206.
17.Steppan CM, Wang J, Whiteman EL, Birnbaum MJ, Lazar MA. Activation of SOCS-3 by resistin. Mol Cell Biol 2005; 25: 1569-1575.
18.Masood KI, Rottenberg ME, Salahuddin N, Irfan M, Rao N, Carow B, et al. Expression of M. tuberculosis-induced suppressor of cytokine signaling (SOCS) 1, SOCS3, FoxP3 and secretion of IL-6 associates with differing clinical severity of tuberculosis. BMC Infect Dis 2013; 13: 13.
19.Collins HL, Kaufmann SH. The many faces of host responses to tuberculosis. Immunology 2001; 103: 1-9.
20.Ji LD, Xu WN, Chai PF, Zheng W, Qian HX, Xu J. Polymorphisms in the CISH gene are associated with susceptibility to tuberculosis in the Chinese Han population. Infect Genet Evol 2014; 28: 240-244.
21.Lee SW, Chuang TY, Huang HH, Lee KF, Chen TT, Kao YH. Interferon gamma polymorphisms associated with susceptibility to tuberculosis in a Han Taiwanese population. J Microbiol Immunol Infect 2015; 48: 376-80.
22.SeattleSNPs. NHLBI Program for Genomic Applications. Seattle, WA: SeattleSNPs; 2005.
23.Woodward J. Bi-allelic SNP genotyping using the TaqMan® assay. Methods Mol Biol 2014; 1145: 67-74.
24.Morris JA, Gardner, MJ. Calculating confidence intervals for relative risks (odds ratios) and standardised ratios and rates. British Medical Journal 1988; 296: 1313–1316.
25.Ashenafi S, Aderaye G, Bekele A, Zewdie M, Aseffa G, Hoang AT, et al. Progression of clinical tuberculosis is associated with a Th2 immune response signature in combination with elevated levels of SOCS3. Clin Immunol 2014; 151: 84-99.
26.Layden JE, Tayo BO, Cotler SJ, Clark NM, Baraoidan K, Friedman SL et al. Association of genetic variants with rapid fibrosis: progression after liver transplantation for hepatitis C. Transplantation. 2014; 97: 1072-8.
27.Fang Y, Ren X, Feng Z. Genetic correlation of SOCS3 polymorphisms with infantile asthma: an evidence based on a case-control study. Int J Clin Exp Pathol. 2015; 8: 9586-91.
28.Jiang BG, Yang Y, Liu H, Gu FM, Yang Y, Zhao LH et al. SOCS3 genetic polymorphism is associated with clinical features and prognosis of hepatocellular carcinoma patients receiving hepatectomy. Medicine (Baltimore). 2015; 94: e1344.
29.Reid-Lombardo KM, Fridley BL, Bamlet WR, Cunningham JM, Sarr MG, Petersen GM. Survival is associated with genetic variation in inflammatory pathway genes among patients with resected and unresected pancreatic cancer. Ann Surg 2013; 257: 1096-1102.
30.Sun LP, Ma XL, Liu HX, Wang YS, Li XF. No association of polymorphisms in the suppressor of cytokine signaling (SOCS)-3 with rheumatoid arthritis in the Chinese Han population. Genet Mol Res 2010; 9: 1518-1524.
31.Gylvin T, Nolsoe R, Hansen T, Nielsen EM, Bergholdt R, Karlsen AE, et al. Mutation analysis of suppressor of cytokine signaling 3, a candidate gene in Type 1 diabetes and insulin sensitivity. Diabetologia 2004, 47: 1273-1277.
Chapter three:
1.Global tuberculosis control - Surveillance, planning, financing. WHO reporter 2007. WHO/HTM/TB/2007.376.
2.Dou HY, Tseng FC, Lin CW, Chang JR, Sun JR, Tsai WS, et al. Molecular epidemiology and evolutionary genetics of Mycobacterium tuberculosis in Taipei. BMC Infect Dis 2008; 8: 170.
3.Hsu YH, Chen CW, Sun HS, Jou R, Lee JJ, Su IJ. Association of NRAMP 1 gene polymorphism with susceptibility to tuberculosis in Taiwanese aboriginals. J Formos Med Assoc 2006; 105: 363-369.
4.Collins HL, Kaufmann SH. The many faces of host responses to tuberculosis. Immunology 2001; 103: 1-9.
5.Cooper AM, Dalton DK, Stewart TA, Griffin JP, Russell DG, Orme IM. Disseminated tuberculosis in interferon gamma genedisrupted mice. J Exp Med 1993; 178: 2243-2247.
6.Casanova JL, Abel L. The human model: a genetic dissection of immunity to infection in natural conditions. Nat Rev Immunol 2004; 4: 55-66.
7.Pravica V, Perrey C, Stevens A, Lee JH, Hutchinson IV. A single nucleotide polymorphism in the first intron of the human IFN-γgene: absolute correlation with a polymorphic CA microsatellite marker of high IFN-γproduction. Hum Immunol 2000; 61: 863-866.
8.Bream JH, Ping A, Zhang X, Winkler C, Young HA. A single nucleotide polymorphism in the proximal IFN-gamma promoter alters control of gene transcription. Genes Immun 2002; 3: 165-169.
9.Bream JH, Carrington M, O’Toole S, Dean M, Gerrard B, Shin HD, et al. Polymorphisms of the human IFNG gene noncoding regions. Immunogenetics 2000; 51: 50-58.
10.Lio D, Marino V, Serauto A, Gioia V, Scola L, Crivello A, et al. Genotype frequencies of the +874T/A single nucleotide polymorphism in the first intron of the interferon-gamma gene in a sample of Sicilian patients affected by tuberculosis. Eur J Immunogenet 2002; 29: 371-374.
11.Rossouw M, Nel HJ, Cooke GS, van Helden PD, Hoal EG. Association between tuberculosis and a polymorphic NFkappaB binding site in the interferon gamma gene. Lancet 2003; 361: 1871-1872.
12.Lopez-Maderuelo D, Arnalich F, Serantes R, Gonza´lez A, Codoceo R, Madero R, et al. Interferon-gamma and interleukin-10 gene polymorphisms in pulmonary tuberculosis. Am J Respir Crit Care Med 2003; 167: 970-975.
13.Tso HW, Ip WK, Chong WP, Tam CM, Chiang AKS, Lau YL. Association of interferon gamma and interleukin 10 genes with tuberculosis in Hong Kong Chinese. Gene Immun 2005; 6: 358-363.
14.Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21: 263-265.
15.Kumar A, Ghosh B. A single nucleotide polymorphism (A → G) in intron 3 of IFNgamma gene is associated with asthma. Genes Immun 2008; 9: 294-301.
16.Kim K, Cho SK, Sestak A, Namjou B, Kang C, Bae SC. Interferongamma gene polymorphisms associated with susceptibility to systemic lupus erythematosus. Ann Rheum Dis 2010; 69: 1247-1250.
17.Bellamy R. Genetic susceptibility to tuberculosis in human populations. Thorax 1998; 53: 588-593.
Chapter four:
1.World Health Organization (WHO). Global Tuberculosis Report 2013. Geneva, 2013. Available at: http://www.who.int/iris/bitstream/10665/91355/1/9789241564 656 eng.pdf?ua=1
2.Hsu YH, Chen CW, Sun HS, Jou R, Lee, IJ, Su IJ. Association of NRAMP 1 gene polymorphism with susceptibility to tuberculosis in Taiwanese aboriginals. J Formos Med Assoc 2006; 105: 363–369.
3.Lee SW, Chuang TY, Huang HH, Lee KF, Chen TT, Kao YH, et al. Interferon gamma polymorphisms associated with susceptibility to tuberculosis in a Han Taiwanese population. J Microbiol Immunol Infect 2015; 48: 376-380.
4.Kliewer SA, Umesono K, Mangelsdorf DJ, Evans RM. Retinoid X receptor interacts with nuclear receptors in retinoic acid, thyroid hormone and vitamin D3 signaling. Nature 1992; 355: 446-449.
5.Lemire JM. Immunomodulatory actions of 1,25-dihydroxyvitamin D3. J Steroid Biochem Mol Biol 1995; 53: 599-602.
6.Imazeki I, Matsuzaki J, Tsuji K, Nishimura T. Immunomodulating effect of vitamin D3 derivatives on type-1 cellular immunity. Biomed Res 2006; 27: 1-9.
7.Deluca HF, Cantorna MT. Vitamin D: its role and uses in immunology. FASEB J 2001; 15: 2579-2585.
8.Leung KH. Inhibition of human natural killer cell and lymphokine-activated killer cell cytotoxicity and differentiation by vitamin D3. Scand J Immunol 1989; 30: 199-208.
9.Rook GA, Steele J, Fraher L, Barker S, Karmali R, O′Riordan J, et al. Vitamin D3, gamma interferon, and control of proliferation of Mycobacterium tuberculosis by human monocytes. Immunology 1986; 57: 159-163.
10.Liu PT, Stenger S, Li H, Wenzel L, Tan BH, Krutzik SR, et al. Toll-like receptor triggering of a vitamin D-mediated human antimicrobial response. Science 2006; 311: 1770-1773.
11.Martineau AR, Wilkinson KA, Newton SM, Floto RA, Norman AW, Skolimowska K, et al. IFN-gamma- and TNF-independent vitamin D-inducible human suppression of mycobacteria: the role of cathelicidin LL-37. J Immunol 2007; 178: 7190-7198.
12.Selvaraj P, Narayanan PR, Reetha AM. Association of vitamin D receptor genotypes with the susceptibility to pulmonary tuberculosis in female patients and resistance in female contacts. Indian J Med Res 2000; 111: 172–179.
13.Bornman L, Campbell SJ, Fielding K, Bah B, Sillah J, Gustafson P, et al. Vitamin D receptor polymorphisms and susceptibility to tuberculosis in west Africa: a case-control and family study. J Infect Dis 2004; 190: 1631–1641.
14.Lewis SJ, Baker I, Davey SG. Meta-analysis of vitamin D receptor polymorphisms and pulmonary tuberculosis risk. Int J Tuberc Lung Dis 2005; 9: 1174-1177.
15.Wilkinson RJ, Llewelyn M, Toossi Z, Patel P, Pasvol G, Lalvani A, et al. Influence of vitamin D deficiency and vitamin D receptor polymorphisms on tuberculosis among Gujarati Asians in west London: a case control study. Lancet 2000; 355: 618–621.
16.Fitness J, Floyd S, Warndorff DK, Sichali L, Malema S, Crampin AC, et al. Large-scale candidate gene study of tuberculosis susceptibility in the Karonga district of northern Malawi. Am J Trop Med Hyg 2004; 71: 341-349.
17.Banoei MM, Mirsaeidi MS, Houshmand M, Tabarsi P, Ebrahimi G, Zargari L, et al. Vitamin D receptor homozygote mutant tt and bb are associated with susceptibility to pulmonary tuberculosis in the Iranian population. Int J Infect Dis 2010; 14: e84-85.
18.Bellamy R, Ruwende C, Corrah T. Tuberculosis and chronic hepatitis B virus infection in Africans and variation in the vitamin D receptor. J Infect Dis 1999; 179: 721-724.
19.Cleve H, Constans J. The mutants of the vitamin-D-binding protein: more than120 variants of the GC/DBP system. Vox Sang 1988; 54: 215-225.
20.Arnaud J, Constans J. Affinity differences for vitamin D metabolites associated with the genetic isoforms of the human serum carrier protein (DBP). Hum Genet 1993; 92: 183-188.
21.Lauridsen AL, Vestergaard P, Hermann AP, Brot C, Heickendorff L, Mosekilde L, et al. Plasma concentrations of 25-hydroxy-vitamin D and 1,25-dihydroxy-vitamin D are related to the phenotype of Gc (vitamin D-binding protein): a cross-sectional study on 595 early postmenopausal women. Calcif Tissue Int 2005; 77: 15-22.
22.Abbas S, Linseisen J, Slanger T, Kropp S, Mutschelknauss EJ, Flesch-Janys D, et al. The Gc2 allele of the vitamin D binding protein is associated with a decreased postmenopausal breast cancer risk, independent of the vitamin d status. Cancer Epidemiol Biomarkers Prev 2008; 17: 1339-1343.
23.Martineau AR, Leandro AC, Anderson ST, Newton SM, Wilkinson KA, Nicol MP, et al. Association between Gc genotype and susceptibility to TB is dependent on vitamin D status. Eur Respir J 2010; 35: 1106-1112.
24.Morrison NA, Qi JC, Tokita A, Kelly PJ, Crofts L, Nguyen TV, et al. Prediction of bone density from vitamin D receptor alleles. Nature 1994; 367: 284-287.
25.Chen C, Liu Q, Zhu L, Yang H, Lu W. Vitamin D receptor gene polymorphisms on the risk of tuberculosis, a meta-analysis of 29 case-control studies. Plos one 2013; 8: e83843.
26.Selvaraj P, Chandra G, Jawahar MS, Rani MV, Rajeshwari DN, Narayanan PR. Regulatory role of vitamin D receptor gene variants of Bsm I, Apa I, Taq I, and Fok I polymorphisms on macrophage phagocytosis and lymphoproliferative response to mycobacterium tuberculosis antigen in pulmonary tuberculosis. J Clin Immunol 2004; 24: 523-532.
27.Uitterlinden AG, Fang Y, Van Meurs JB, Pols HA, Van Leeuwen JP. Genetics and biology of vitamin D receptor polymorphisms. Gene 2004; 338: 143-56.
28.Arai H, Miyamoto K, Taketani Y, Yamamoto H, Iemori Y, Morita K, et al. A vitamin D receptor gene polymorphism in the translation initiation codon: effect on protein activity and relation to bone mineral density in Japanese women. J Bone Miner Res 1997; 12: 915-921.
29.Gao L, Tao Y, Zhang L, Jin Q. Vitamin D receptor genetic polymorphisms and tuberculosis: updated systematic review and meta-analysis. Int J Tuberc Lung Dis 2010; 14: 15-23.
30.Eales LJ, Nye KE, Parkin JM, Weber JN, Forster SM, Harris JR, et al. Association of different allelic forms of group specific component with susceptibility to and clinical manifestation of human immunodeficiency virusinfection. Lancet 1987; 1: 999-1002.
31.Alonso A, Montesino M, Iturralde MJ, Vallejo G, Sancho M, Tena G, et al. GC subtyping and HIV infection in a Spanish population: no evidence of an association between GC subtypes and AIDS. Hum Hered 1990; 40: 34-37.
32.Cleve H, Weidinger S, Gurtler LG, Deinhardt F. AIDS: no association with the genetic systems GC (D-binding protein), ORM (orosomucoid = alpha-1-acid glycoprotein), and A2HS (alpha-2-HS-glycoprotein). Infection 1988; 16: 31-35.
33.Pronk JC, Frants RR, Crusius B, et al. No predictive value of GC phenotypes for HIV infection and progression to AIDS. Hum Genet 1988; 80: 181-182.
34.Papiha SS, White I, Roberts DF. Some genetic implications of isoelectric focusing of human red cell phosphoglucomutase (PGM1) and serum protein group specific component (Gc): genetic diversity in the populations of Himachal Pradesh, India. Hum Genet 1983; 63: 67-72.
35.Spitsyn VA, Titenko NV. Subtypes of serum group specific component (Gc) in normal conditions and in pathology. Genetika 1990; 26: 749-759.
36.Wilkinson RJ, Lange C. Vitamin D and tuberculosis: new light on a potent biologic therapy? Am J Respir Crit Care Med 2009; 179: 740-742.
37.Selvaraj P, Kurian SM, Uma H, Reetha AM, Narayanan PR. Influence of non-MHC genes on lymphocyte response to Mycobacterium tuberculosis antigens & tuberculin reactive status in pulmonary tuberculosis. Indian J Med Res 2000; 112: 86-92.
38.Lewis SJ, Baker I, Davey Smith G. Meta-analysis of vitamin D receptor polymorphisms and pulmonary tuberculosis risk. Int J Tuberc Lung Dis 2005; 9: 1174-1177.
39.Søborg C, Andersen AB, Range N, Malenganisho W, Friis H, Magnussen P, et al. Influence of candidate susceptibility genes on tuberculosis in a high endemic region. Mol Immunol 2007; 44: 2213-2220.
Chapter five:
1.Comstock GW. Tuberculosis in twins: a re-analysis of the Prophit survey. Am Rev Respir Dis 1978; 117: 621-624.
2.Mahasirimongkol S, Yanai H, Nishida N, Ridruechai C, Matsushita I, Ohashi J, et al. Genome-wide SNP-based linkage analysis of tuberculosis in Thais. Genes Immun 2009; 10: 77-83.
3.Miller EN, Jamieson SE, Joberty C, Fakiola M, Hudson D, Peacock CS, et al. Genome-wide scans for leprosy and tuberculosis susceptibility genes in Brazilians. Genes Immun 2004; 5: 63-67.
4.Jamieson SE, Miller EN, Black GF, Peacock CS, Cordell HJ, Howson JM, et al. Evidence for a cluster of genes on chromosome 17q11-q21 controlling susceptibility to tuberculosis and leprosy in Brazilians. Genes Immun 2004; 5: 46-57.
5.Thye T, Vannberg FO, Wong SH, Owusu-Dabo E, Osei I, Gyapong J, et al. Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2. Nat Genet 2010; 42: 739-741.
6.Taiwan Tuberculosis Control Report 2012. Centers for Disease Control, Department of Health, R.O.C. (Taiwan).
7.Qu HQ, Fisher-Hoch SP, McCormick JB. Knowledge gaining by human genetic studies on tuberculosis susceptibility. J Hum Genet 2011; 56: 177-182.
8.Hsu YH, Chen CW, Sun HS, Jou R, Lee JJ, Su IJ. Association of NRAMP 1 gene polymorphism with susceptibility to tuberculosis in Taiwanese aboriginals. J Formos Med Assoc 2006; 105: 363-369.
9.Dai Y, Zhang X, Pan H, Tang S, Shen H, Wang J. Fine mapping of genetic polymorphisms of pulmonary tuberculosis within chromosome 18q11.2 in the Chinese population: a case-control study. BMC Infect Dis 2011; 11: 282.
10.El Gammal AT, Bru¨chmann M, Zustin J, Isbarn H, Hellwinkel OJ, Ko¨llermann J, et al. Chromosome 8p deletions and 8q gains are associated with tumor progression and poor prognosis in prostate cancer. Clin Cancer Res 2010; 16: 56-64. |