參考文獻 |
1. Curreli, M.Rui, Zhang Ishikawa, F. N.Hsiao-Kang, Chang Cote, R. J.Chongwu, Zhou Thompson, M. E., Real-Time, Label-Free Detection of Biological Entities Using Nanowire-Based FETs. IEEE Transactions on Nanotechnology, 2008. 7(6): p. 651-667.
2. Li, Z.Chen, Y. Li, X. Kamins, T. I. Nauka, K.Williams, R. S., Sequence-Specific Label-Free DNA Sensors Based on Silicon Nanowires. Nano Letters, 2004. 4(2): p. 245-247.
3. Levicky, R. and A. Horgan, Physicochemical perspectives on DNA microarray and biosensor technologies. Trends Biotechnol, 2005. 23(3): p. 143-9.
4. Sang, S.Wang, Y. Feng, Q.Wei, Y. Ji, J. Zhang, W., Progress of new label-free techniques for biosensors: a review. Crit Rev Biotechnol, 2016. 36(3): p. 465-81.
5. Sassolas, A., B.D. Leca-Bouvier, and L.J. Blum, DNA Biosensors and Microarrays. Chemical Reviews, 2008. 108(1): p. 109-139.
6. Li, D., S. Song, and C. Fan, Target-Responsive Structural Switching for Nucleic Acid-Based Sensors. Accounts of Chemical Research, 2010. 43(5): p. 631-641.
7. Song, Shiping Qin, Yu He, Yao Huang, Qing Fan, Chunhai Chen, Hong-Yuan, Functional nanoprobes for ultrasensitive detection of biomolecules. Chemical Society Reviews, 2010. 39(11): p. 4234-4243.
8. Wang, J., Electrochemical biosensors: towards point-of-care cancer diagnostics. Biosens Bioelectron, 2006. 21(10): p. 1887-92.
9. Burns, Mark A. Johnson, Brian N.Brahmasandra, Sundaresh N. Handique, Kalyan Webster, James R. Krishnan, Madhavi Sammarco, Timothy S.Man, Piu M. Jones, Darren Heldsinger, Dylan Mastrangelo, Carlos H. Burke, David T., An Integrated Nanoliter DNA Analysis Device. Science, 1998. 282(5388): p. 484-487.
10. Niu, S., G. Singh, and R.F. Saraf, Label-less fluorescence-based method to detect hybridization with applications to DNA micro-array. Biosensors and Bioelectronics, 2007. 23(5): p. 714-720.
11. Oh, S.J., et al., Surface modification for DNA and protein microarrays. Omics-a Journal of Integrative Biology, 2006. 10(3): p. 327-343.
12. Samoc, M., A. Samoc, and J.G. Grote, Complex nonlinear refractive index of DNA. Chemical Physics Letters, 2006. 431(1-3): p. 132-134.
13. Demirel, Gökhan Çağlayan, Mustafa O.Garipcan, Bora Pişkin, Erhan, A novel DNA biosensor based on ellipsometry. Surface Science, 2008. 602(4): p. 952-959.
14. Nabok, A. Tsargorodskaya, A. Davis, F. Higson, S. P., The study of genomic DNA adsorption and subsequent interactions using total internal reflection ellipsometry. Biosens Bioelectron, 2007. 23(3): p. 377-83.
15. Feltis, B. N.Sexton, B. A.Glenn, F. L.Best, M. J.Wilkins, M.Davis, T. J., A hand-held surface plasmon resonance biosensor for the detection of ricin and other biological agents. Biosens Bioelectron, 2008. 23(7): p. 1131-6.
16. Homola, J., S.S. Yee, and G. Gauglitz, Surface plasmon resonance sensors: review. Sensors and Actuators B: Chemical, 1999. 54(1–2): p. 3-15.
17. Mavri, J., P. Raspor, and M. Franko, Application of chromogenic reagents in surface plasmon resonance (SPR). Biosens Bioelectron, 2007. 22(6): p. 1163-7.
18. McKendry, R. Zhang, J. Arntz, Y. Strunz, T. Hegner, M. Lang, H. P.Baller, M. K. Certa, U. Meyer, E. Guntherodt, H. J. Gerber, C., Multiple label-free biodetection and quantitative DNA-binding assays on a nanomechanical cantilever array. Proc Natl Acad Sci U S A, 2002. 99(15): p. 9783-8.
19. Qavi, A.J. and R.C. Bailey, Multiplexed detection and label-free quantitation of microRNAs using arrays of silicon photonic microring resonators. Angew Chem Int Ed Engl, 2010. 49(27): p. 4608-11.
20. Mestdagh, P. Feys, T. Bernard, N. Guenther, S. Chen, C. Speleman, F. Vandesompele, J., High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA. Nucleic Acids Res, 2008. 36(21): p. e143.
21. Chen, K.-I., B.-R. Li, and Y.-T. Chen, Silicon nanowire field-effect transistor-based biosensors for biomedical diagnosis and cellular recording investigation. Nano Today, 2011. 6(2): p. 131-154.
22. Atalla, M.M., E. Tannenbaum, and E.J. Scheibner, Stabilization of Silicon Surfaces by Thermally Grown Oxides*. Bell System Technical Journal, 1959. 38(3): p. 749-783.
23. Tsai, C. C. Chiang, P. L. Sun, C. J. Lin, T. W. Tsai, M. H. Chang, Y. C. Chen, Y. T., Surface potential variations on a silicon nanowire transistor in biomolecular modification and detection. Nanotechnology, 2011. 22(13): p. 135503.
24. Watson, J. D.a.F. H. C. C., Molecular-Structure of Nucleic-Acids - a Structure for Deoxyribose Nucleic-Acid. . Jama-Journal of the American Medical Association,, 1993. 269(15): p. 1966-1967.
25. Wu, C. C. Ko, F. H. Yang, Y. S. Hsia, D. L.Lee, B. S.Su, T. S., Label-free biosensing of a gene mutation using a silicon nanowire field-effect transistor. Biosens Bioelectron, 2009. 25(4): p. 820-5.
26. Fohrer, J., M. Hennig, and T. Carlomagno, Influence of the 2′-hydroxyl group conformation on the stability of A-form helices in RNA. J Mol Biol, 2006. 356(2): p. 280-7.
27. Olsen, P.H. and V. Ambros, The lin-4 Regulatory RNA Controls Developmental Timing in Caenorhabditis elegans by Blocking LIN-14 Protein Synthesis after the Initiation of Translation. Developmental Biology, 1999. 216(2): p. 671-680.
28. Wang, W. X. Rajeev, B. W. Stromberg, A. J.Ren, N. Tang, G. Huang, Q. Rigoutsos, I. Nelson, P. T., The expression of microRNA miR-107 decreases early in Alzheimer′s disease and may accelerate disease progression through regulation of beta-site amyloid precursor protein-cleaving enzyme 1. J Neurosci, 2008. 28(5): p. 1213-23.
29. Wang, Kai Yuan, Yue Cho, Ji-Hoon McClarty, Sara Baxter, David Galas, David J., Comparing the MicroRNA Spectrum between Serum and Plasma. PLoS ONE, 2012. 7(7): p. e41561.
30. Lu, N. Gao, A. Dai, P. Song, S. Fan, C. Wang, Y. Li, T., CMOS-compatible silicon nanowire field-effect transistors for ultrasensitive and label-free microRNAs sensing. Small, 2014. 10(10): p. 2022-8.
31. Gao, Zhiqiang Agarwal, Ajay Trigg, Alastair D.Singh, Navab Fang, Cheng Tung, Chih-HangFan, Yi Buddharaju, Kavitha D. Kong, Jinming. Label-free and ultrasensitive detection of microrna biomarkers in lung cancer cells based on silicon nanowire FET biosensors. in 2013 Transducers & Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems (TRANSDUCERS & EUROSENSORS XXVII). 2013.
32. Zhang, G. J. Chua, J. H. Chee, R. E. Agarwal, A.Wong, S. M., Label-free direct detection of MiRNAs with silicon nanowire biosensors. Biosens Bioelectron, 2009. 24(8): p. 2504-8.
33. Denison, C. and T. Kodadek, Small-molecule-based strategies for controlling gene expression. Chemistry & Biology, 1998. 5(6): p. R129-R145.
34. Dervan, P.B., Molecular recognition of DNA by small molecules. Bioorganic & Medicinal Chemistry, 2001. 9(9): p. 2215-2235.
35. Demidov, V.V. and M.D. Frank-Kamenetskii, Two sides of the coin: affinity and specificity of nucleic acid interactions. Trends in Biochemical Sciences, 2004. 29(2): p. 62-71.
36. Obika, Satoshi Nanbu, Daishu Hari, Yoshiyuki Morio, Ken-ichiroIn, Yasuko Ishida, Toshimasa Imanishi, Takeshi, Synthesis of 2′-O,4′-C-methyleneuridine and -cytidine. Novel bicyclic nucleosides having a fixed C3, -endo sugar puckering. Tetrahedron Letters, 1997. 38(50): p. 8735-8738.
37. Bondensgaard, Kent Petersen, Michael Singh, Sanjay K. Rajwanshi, Vivek K. Kumar, Ravindra Wengel, Jesper Jacobsen, Jens Peter, Structural Studies of LNA:RNA Duplexes by NMR: Conformations and Implications for RNase H Activity. Chemistry – A European Journal, 2000. 6(15): p. 2687-2695.
38. Tomac, Sebastian Sarkar, Munna Ratilainen, Tommi Wittung, Pernilla Nielsen, Peter E. Nordén, Bengt Gräslund, Astrid, Ionic Effects on the Stability and Conformation of Peptide Nucleic Acid Complexes. Journal of the American Chemical Society, 1996. 118(24): p. 5544-5552.
39. Koppelhus, U. and P.E. Nielsen, Cellular delivery of peptide nucleic acid (PNA). Advanced Drug Delivery Reviews, 2003. 55(2): p. 267-280.
40. Egholm, Michael Buchardt, Ole Christensen, Leif Behrens, Carsten Freier, Susan M. Driver, David A. Berg, Rolf H. Kim, Seog K. Norden, Bengt Nielsen, Peter E., PNA hybridizes to complementary oligonucleotides obeying the WatsonCrick hydrogen-bonding rules. Nature, 1993. 365(6446): p. 566-568.
41. Cai, Bingjie Wang, Shuting Huang, Le .Ning, Yong Zhang, Zhiyong. Zhang, Guo-Jun, Ultrasensitive Label-Free Detection of PNA–DNA Hybridization by Reduced Graphene Oxide Field-Effect Transistor Biosensor. ACS Nano, 2014. 8(3): p. 2632-2638.
42. Cattani-Scholz, Anna Pedone, Daniel Dubey, Manish Neppl, Stefan Nickel, Bert Feulner, Peter Schwartz, Jeffrey Abstreiter, Gerhard Tornow, Marc, Organophosphonate-Based PNA-Functionalization of Silicon Nanowires for Label-Free DNA Detection. ACS Nano, 2008. 2(8): p. 1653-1660.
43. Gao, Zhiqian Agarwal, Ajay Trigg, Alastair D.Singh, Navab Fang, Cheng Tung, Chih-Hang Fan, Yi Buddharaju, Kavitha D.Kong, Jinming, Silicon Nanowire Arrays for Label-Free Detection of DNA. Analytical Chemistry, 2007. 79(9): p. 3291-3297.
44. Hahm, J.-i. and C.M. Lieber, Direct Ultrasensitive Electrical Detection of DNA and DNA Sequence Variations Using Nanowire Nanosensors. Nano Letters, 2004. 4(1): p. 51-54.
45. Li, Z. Rajendran, B. Kamins, T. I. Li, X. Chen, Y. Williams, R. Stanley, Silicon nanowires for sequence-specific DNA sensing: device fabrication and simulation. Applied Physics A, 2005. 80(6): p. 1257-1263.
46. Zhang, Guo-Jun Chua, Jay Huiyi Chee, Ru-Ern Agarwal, Ajay Wong, She Mein Buddharaju, Kavitha D. Balasubramanian, N., Highly sensitive measurements of PNA-DNA hybridization using oxide-etched silicon nanowire biosensors. Biosensors and Bioelectronics, 2008. 23(11): p. 1701-1707.
47. Zhang, Guo-Jun Zhang, Li Huang, Min Joon Luo, Zhan Hong Henry Tay, Guang Kai Ignatius Lim, Eu-Jin Andy Kang, Tae Goo Chen, Yu, Silicon nanowire biosensor for highly sensitive and rapid detection of Dengue virus. Sensors and Actuators B: Chemical, 2010. 146(1): p. 138-144.
48. Koshkin, A.A., et al., LNA (locked nucleic acid): an RNA mimic forming exceedingly stable LNA: LNA duplexes. Journal of the American Chemical Society,, 1998. 120(50): p. 13252-13253.
49. Summerton, J. and D. Weller, Morpholino Antisense Oligomers: Design, Preparation, and Properties. Antisense and Nucleic Acid Drug Development, 1997. 7(3): p. 187-195.
50. Summerton, J., Morpholino antisense oligomers: the case for an RNase H-independent structural type. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, 1999. 1489(1): p. 141-158.
51. Zhang, Guo-Jun Luo, Zhan Hong Henry Huang, Min Joon Tay, Guang Kai Ignatius Lim, Eu-Jin Andy, Morpholino-functionalized silicon nanowire biosensor for sequence-specific label-free detection of DNA. Biosensors and Bioelectronics, 2010. 25(11): p. 2447-2453.
52. Koole, Leo H. Moody, Harold M. Broeders, Niek L. H. L. Quaedflieg, Peter J. L. M. Kuijpers, Will H. A. Van Genderen, Marcel H. P. Coenen, Annie J. J. M. Van der Wal, Sjoerd Buck, Henk M., Synthesis of phosphate-methylated DNA fragments using 9-fluorenylmethoxycarbonyl as transient base protecting group. The Journal of Organic Chemistry, 1989. 54(7): p. 1657-1664.
53. W.H.A.Kuijpers, J.H., L.H.Koole and C.A.A.van Boecke, Synthesis of well-defined phosphate-methylated DNA fragments: the application of potassium carbonate in methanol as deprotecting reagent. Nucleic acids research, 1990. 18(17): p. 5197-5205.
54. van Genderen, M.H.P., L.H. Koole, and H.M. Buck, Hybridization of phosphate-methylated DNA and natural oligonucleotides. Implications for protein-induced DNA duplex destabilization. Recueil des Travaux Chimiques des Pays-Bas, 1989. 108(1): p. 28-35.
55. Coenen, A. J. J. M. Henckens, L. H. G. Mengerink, Y. van der Wal, Sj Quaedflieg, P. J. L. M. Koole, L. H. Meijer, E. M., Optimization of the separation of the Rp and Sp diastereomers of phosphate-methylated DNA and RNA dinucleotides. Journal of Chromatography A, 1992. 596(1): p. 59-66.
56. Miller, P.S., et al., Syntheses and properties of adenine and thymine nucleoside alkyl phosphotriesters, the neutral analogs of dinucleoside monophosphates. . Journal of the American Chemical Society,, 1971. 93(24): p. 6657.
57. Miller, P.S., L.T. Braiterman, and P.O.P. Ts′o, Effects of a trinucleotide ethyl phosphotriester, Gmp(Et)Gmp(Et)U, on mammalian cells in culture. Biochemistry, 1977. 16(9): p. 1988-1996.
58. Koole, L.H.a.H.M.B., Enhanced stability of a Watson & Crick DNA duplex structure by methylation of the phosphate groups in one strand. in Proc. K. Ned. Acad. Wet., 1987.
59. Buck, H.M., A conformational B-Z DNA study monitored with phosphatemethylated DNA as a model for epigenetic dynamics focused on 5-(hydroxy)methylcytosine. Journal of Biophysical Chemistry, 2013. Vol.04No.02: p. 10.
60. L. Mu Y. Chang S. D. Sawtelle M. Wipf X. Duan M. A. Reed, Silicon Nanowire Field-Effect Transistors—A Versatile Class of Potentiometric Nanobiosensors. IEEE Access, 2015. 3: p. 287-302.
61. SCHILDKRAUT, C., Dependence of the Melting Temperature of DNA on Salt Concentration. BIOPOLY MERS, 1965. 3: p. 195-208.
62. Debye-length-Multi-scale modeling and simulation of field-effect nano-biosensors-Wolfgang Pauli Institute (WPI) Vienna 2008.
63. Stern, Eric Wagner, Robin Sigworth, Fred J. Breaker, Ronald Fahmy, Tarek M. Reed, Mark A., Importance of the Debye Screening Length on Nanowire Field Effect Transistor Sensors. Nano Letters, 2007. 7(11): p. 3405-3409.
64. Elnathan, R. Kwiat, M. Pevzner, A.Engel, Y.Burstein, L.Khatchtourints, A.Lichtenstein, A.Kantaev, R.Patolsky, F., Biorecognition Layer Engineering: Overcoming Screening Limitations of Nanowire-Based FET Devices. Nano Letters, 2012. 12(10): p. 5245-5254.
65. Stern, Eric Vacic, Aleksandar Rajan, Nitin K. Criscione, Jason M. Park, Jason Ilic, Bojan R. Mooney, David J. Reed, Mark A. Fahmy, Tarek M., Label-free biomarker detection from whole blood. Nat Nano, 2010. 5(2): p. 138-142.
66. Zheng, Gengfeng Patolsky, Fernando Cui, Yi Wang, Wayne U. Lieber, Charles M., Multiplexed electrical detection of cancer markers with nanowire sensor arrays. Nat Biotech, 2005. 23(10): p. 1294-1301.
67. Uslu, F. Ingebrandt, S. Mayer, D. Bocker-Meffert, S. Odenthal, M. Offenhausser, A., Labelfree fully electronic nucleic acid detection system based on a field-effect transistor device. Biosensors and Bioelectronics, 2004. 19(12): p. 1723-1731.
68. Poghossian, A. Cherstvy, A. Ingebrandt, S. Offenhäusser, A. Schöning, M. J., Possibilities and limitations of label-free detection of DNA hybridization with field-effect-based devices. Sensors and Actuators B: Chemical, 2005. 111-112: p. 470-480.
69. 國立交通大學楊裕雄教授實驗室.
70. Kelly, S.M., T.J. Jess, and N.C. Price, How to study proteins by circular dichroism. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2005. 1751(2): p. 119-139.
71. Gray, D.M., R.L. Ratliff, and M.R. Vaughan, [19] Circular dichroism spectroscopy of DNA, in Methods in Enzymology. 1992, Academic Press. p. 389-406.
72. Lin, Kuo-Chih, Wey, Ming-Tsai, Kan, Lou-Sing, Shiuan, David, Characterization of the Interactions of Lysozyme with DNA by Surface Plasmon Resonance and Circular Dichroism Spectroscopy. Applied Biochemistry and Biotechnology, 2009. 158(3): p. 631-641.
73. Hyung-Kyu, L. and J.G. Fossum, Threshold voltage of thin-film Silicon-on-insulator (SOI) MOSFET′s. IEEE Transactions on Electron Devices, 1983. 30(10): p. 1244-1251.
74. Ortiz-Conde, A., Garcı́a Sánchez, F. J., Liou, J. J., Cerdeira, A., Estrada, M., Yue, Y., A review of recent MOSFET threshold voltage extraction methods. Microelectronics Reliability, 2002. 42(4–5): p. 583-596.
75. Liu, B.D., Y.K. Su, and S.C. Chen, Ion-sensitive field-effect transistor with silicon nitride gate for pH sensing. International Journal of Electronics, 1989. 67(1): p. 59-63.
76. Egginger, Martin, Bauer, Siegfried, Schwödiauer, Reinhard, Neugebauer, Helmut, Sariciftci, Niyazi Serdar, Current versus gate voltage hysteresis in organic field effect transistors. Monatshefte für Chemie - Chemical Monthly, 2009. 140(7): p. 735-750.
77. Natsume, T., Ishikawa, Y., Dedachi, K., Tsukamoto, T., Kurita, N., Hybridization energies of double strands composed of DNA, RNA, PNA and LNA. Chem Phys Lett, 2007. 434(1-3): p. 133-138.
78. Christopher G. Janson M.D., M.J.D.M.D., Sc.D. , Peptide Nucleic Acids, Morpholinos and Related Antisense Biomolecules. Medical Intelligence Unit 2006.
79. http://ghtf.biochem.uci.edu/content/illumina-guidelines. |