參考文獻 |
1.Dahm, R., Friedrich Miescher and the discovery of DNA. Developmental Biology, 2005. 278(2): p. 274-288.
2.Watson, J.D. and F.H. Crick, A structure for deoxyribose nucleic acid. Nature, 1953. 171: p. 737-738.
3.Collins, F.S., et al., New Goals for the U.S. Human Genome Project: 1998-2003. Science, 1998. 282(5389): p. 682.
4.Wing, R., et al., Crystal structure analysis of a complete turn of B-DNA. Nature, 1980. 287(5784): p. 755-758.
5.Tullius, T.D. and B.A. Dombroski, Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein. Proceedings of the National Academy of Sciences of the United States of America, 1986. 83(15): p. 5469-5473.
6.Leslie, A.G.W., et al., Polymorphism of DNA double helices. Journal of Molecular Biology, 1980. 143(1): p. 49-72.
7.Xiong, Y. and M. Sundaralingam, Crystal structure of a DNA·RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC). Nucleic Acids Research, 2000. 28(10): p. 2171-2176.
8.Rich, A., The biology of left-handed Z-DNA. Journal of Biological Chemistry, 1996. 271(20): p. 11595-11598.
9.Wang, A.H.J., et al., Molecular structure of a left-handed double helical DNA fragment at atomic resolution. Nature, 1979. 282(5740): p. 680-686.
10.Higgs, P.G., RNA Secondary Structure: Physical and Computational Aspects. 2000: Cambridge University Press.
11.Lee, R.C., R.L. Feinbaum, and V. Ambros, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell. 75(5): p. 843-854.
12.Reinhart, B.J., et al., The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. nature, 2000. 403(6772): p. 901-906.
13.Pasquinelli, A.E., et al., Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA. Nature, 2000. 408(6808): p. 86-89.
14.Ambros, V., The functions of animal microRNAs. Nature, 2004. 431(7006): p. 350-355.
15.Bartel, D.P., MicroRNAs: Genomics, Biogenesis, Mechanism, and Function. Cell, 2004. 116(2): p. 281-297.
16.Sen, G.L. and H.M. Blau, Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nat Cell Biol, 2005. 7(6): p. 633-636.
17.Valencia-Sanchez, M.A., et al., Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & development, 2006. 20(5): p. 515-524.
18.Yan, L.-X., et al., MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis. Rna, 2008. 14(11): p. 2348-2360.
19.Zhang, Z., et al., miR-21 plays a pivotal role in gastric cancer pathogenesis and progression. Laboratory investigation, 2008. 88(12): p. 1358-1366.
20.Zhang, J.-g., et al., MicroRNA-21 (miR-21) represses tumor suppressor PTEN and promotes growth and invasion in non-small cell lung cancer (NSCLC). Clinica chimica acta, 2010. 411(11): p. 846-852.
21.Palmer, S., et al., New Real-Time Reverse Transcriptase-Initiated PCR Assay with Single-Copy Sensitivity for Human Immunodeficiency Virus Type 1 RNA in Plasma. Journal of Clinical Microbiology, 2003. 41(10): p. 4531-4536.
22.Raymond, C.K., et al., Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs. Rna, 2005. 11(11): p. 1737-1744.
23.Latorra, D., K. Arar, and J. Michael Hurley, Design considerations and effects of LNA in PCR primers. Molecular and Cellular Probes, 2003. 17(5): p. 253-259.
24.Egholm, M., et al., Peptide nucleic acids (PNA). Oligonucleotide analogs with an achiral peptide backbone. Journal of the American Chemical Society, 1992. 114(5): p. 1895-1897.
25.Egholm, M., et al., PNA HYBRIDIZES TO COMPLEMENTARY OLIGONUCLEOTIDES OBEYING THE WATSON-CRICK HYDROGEN-BONDING RULES. Nature, 1993. 365(6446): p. 566-568.
26.Tomac, S., et al., Ionic effects on the stability and conformation of peptide nucleic acid complexes. Journal of the American Chemical Society, 1996. 118(24): p. 5544-5552.
27.Oliveira, K., et al., Rapid identification of Staphylococcus aureus directly from blood cultures by fluorescence in situ hybridization with peptide nucleic acid probes. Journal of clinical microbiology, 2002. 40(1): p. 247-251.
28.Wang, J., et al., Peptide nucleic acid probes for sequence-specific DNA biosensors. Journal of the American Chemical Society, 1996. 118(33): p. 7667-7670.
29.Ray, A. and B. Norden, Peptide nucleic acid (PNA): its medical and biotechnical applications and promise for the future. Faseb Journal, 2000. 14(9): p. 1041-1060.
30.Obika, S., et al., Synthesis of 2′-O, 4′-C-methyleneuridine and-cytidine. Novel bicyclic nucleosides having a fixed C 3,-endo sugar puckering. Tetrahedron Letters, 1997. 38(50): p. 8735-8738.
31.Kaur, H., J. Wengel, and S. Maiti, Thermodynamics of DNA-RNA heteroduplex formation: Effects of locked nucleic acid nucleotides incorporated into the DNA strand. Biochemistry, 2008. 47(4): p. 1218-1227.
32.Levin, J.D., et al., Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers. Nucleic acids research, 2006. 34(20): p. e142-e142.
33.Obernosterer, G., J. Martinez, and M. Alenius, Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections. Nat. Protocols, 2007. 2(6): p. 1508-1514.
34.Koole, L.H., et al., Synthesis of phosphate-methylated DNA fragments using 9-fluorenylmethoxycarbonyl as transient base protecting group. The Journal of Organic Chemistry, 1989. 54(7): p. 1657-1664.
35.Kuijpers, W.H., et al., Synthesis of well-defined phosphate-methylated DNA fragments: the application of potassium carbonate in methanol as deprotecting reagent. Nucleic Acids Research, 1990. 18(17): p. 5197-5205.
36.Coenen, A., et al., OPTIMIZATION OF THE SEPARATION OF THE RP AND SP DIASTEREOMERS OF PHOSPHATE-METHYLATED DNA AND RNA DINUCLEOTIDES. Journal of Chromatography, 1992. 596(1): p. 59-66.
37.van Genderen, M.H., L.H. Koole, and H.M. Buck, Hybridization of phosphatemethylated DNA and natural oligonucleotides. Implications for protein-induced DNA duplex destabilization. Recl. Trav. Chim. Pays-Bas, 1989. 108: p. 28-35.
38.Miller, P.S., et al., Syntheses and properties of adenine and thymine nucleoside alkyl phosphotriesters, the neutral analogs of dinucleoside monophosphates. Journal of the American Chemical Society, 1971. 93(24): p. 6657-6665.
39.Miller, P.S., L.T. Braiterman, and P.O. Ts′o, Effects of a trinucleotide ethyl phosphotriester, Gmp (Et) Gmp (Et) U, on mammalian cells in culture. Biochemistry, 1977. 16(9): p. 1988-1996.
40.Koole, L.H., et al. Enhanced stability of a Watson & Crick DNA duplex structure by methylation of the phosphate groups in one strand. in Proc. K. Ned. Acad. Wet. 1987.
41.陳奕儒 and Y.-J. Chen, 探討中性DNA與一般DNA雜交反應熱力學與結合機制之研究;Studies of thermodynamic and mechanism for neutralized DNA (nDNA)/DNA and DNA/DNA duplex formation. 國立中央大學.
42.Caruthers, M.H., Gene synthesis machines: DNA chemistry and its uses. Science, 1985. 230(4723): p. 281.
43.Stoneking, M., Single nucleotide polymorphisms: From the evolutionary past. Nature, 2001. 409(6822): p. 821-822.
44.Cargill, M., et al., Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nat Genet, 1999. 22(3): p. 231-238.
45.You, Y., et al., Design of LNA probes that improve mismatch discrimination. Nucleic Acids Research, 2006. 34(8): p. e60-e60.
46.Fleige, S. and M.W. Pfaffl, RNA integrity and the effect on the real-time qRT-PCR performance. Molecular aspects of medicine, 2006. 27(2): p. 126-139.
47.Swinehart, D., The beer-lambert law. J. Chem. Educ, 1962. 39(7): p. 333.
48.Mullis, K.B., The unusual origin of the polymerase chain reaction. Scientific American, 1990. 262(4): p. 56-61.
49.Dieffenbach, C., T. Lowe, and G. Dveksler, General concepts for PCR primer design. PCR Methods Appl, 1993. 3(3): p. S30-S37.
50.Yamagami, T., et al., A longer finger-subdomain of family A DNA polymerases found by metagenomic analysis strengthens DNA binding and primer extension abilities. Gene, 2016. 576(2): p. 690-695.
51.Lundberg, K.S., et al., HIGH-FIDELITY AMPLIFICATION USING A THERMOSTABLE DNA-POLYMERASE ISOLATED FROM PYROCOCCUS-FURIOSUS. Gene, 1991. 108(1): p. 1-6.
52.McHenry, C. and W. Crow, DNA polymerase III of Escherichia coli. Purification and identification of subunits. Journal of Biological Chemistry, 1979. 254(5): p. 1748-1753.
53.Saiki, R.K., et al., Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 1988. 239(4839): p. 487.
54.Cline, J., J.C. Braman, and H.H. Hogrefe, PCR fidelity of Pfu DNA polymerase and other thermostable DNA polymerases. Nucleic acids research, 1996. 24(18): p. 3546-3551.
55.Ehlen, T. and L. Dubeau, Detection of ras point mutations by polymerase chain reaction using mutation-specific, inosine-containing oligonucleotide primers. Biochemical and biophysical research communications, 1989. 160(2): p. 441-447.
56.Innis, M.A., et al., PCR protocols: a guide to methods and applications. 2012: Academic press.
57.Henegariu, O., et al., Multiplex PCR: critical parameters and step-by-step protocol. Biotechniques, 1997. 23(3): p. 504-511.
58.Tani, H., et al., Universal quenching probe system: flexible, specific, and cost-effective real-time polymerase chain reaction method. Analytical chemistry, 2009. 81(14): p. 5678-5685.
59.Echols, H. and M.F. Goodman, Fidelity mechanisms in DNA replication. Annual review of biochemistry, 1991. 60(1): p. 477-511.
60.Berg JM, T.J., Stryer L., Biochemistry. 5th edition. 2002.
61.Johnson, S.J. and L.S. Beese, Structures of mismatch replication errors observed in a DNA polymerase. Cell, 2004. 116(6): p. 803-816.
62.Vester, B. and J. Wengel, LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA. Biochemistry, 2004. 43(42): p. 13233-13241.
63.Ballantyne, K.N., R.A.H. van Oorschot, and R.J. Mitchell, Locked nucleic acids in PCR primers increase sensitivity and performance. Genomics, 2008. 91(3): p. 301-305.
64.Petruska, J., et al., Comparison between DNA melting thermodynamics and DNA polymerase fidelity. Proceedings of the National Academy of Sciences, 1988. 85(17): p. 6252-6256.
65.Harris, S.A., Z.A. Sands, and C.A. Laughton, Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA. Biophysical journal, 2005. 88(3): p. 1684-1691.
66.Latorra, D., et al., Enhanced allele‐specific PCR discrimination in SNP genotyping using 3′ locked nucleic acid (LNA) primers. Human mutation, 2003. 22(1): p. 79-85.
67.Hayes, J., P.P. Peruzzi, and S. Lawler, MicroRNAs in cancer: biomarkers, functions and therapy. Trends in molecular medicine, 2014. 20(8): p. 460-469.
68.Hammond, S.M., RNAi, microRNAs, and human disease. Cancer Chemotherapy and Pharmacology, 2006. 58: p. S63-S68.
69.Li, H.L., et al., miR-17-5p promotes human breast cancer cell migration and invasion through suppression of HBP1. Breast Cancer Research and Treatment, 2011. 126(3): p. 565-575.
70.He, X., et al., Increasing specificity of real time PCR to detect microRNA through primer design and annealing temperature increase. Beijing da xue xue bao. Yi xue ban= Journal of Peking University. Health sciences, 2009. 41(6): p. 691-698.
71.Ugozzoli, L.A., et al., Real-time genotyping with oligonucleotide probes containing locked nucleic acids. Analytical biochemistry, 2004. 324(1): p. 143-152.
72.Johnson, M.P., L.M. Haupt, and L.R. Griffiths, Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real‐time PCR. Nucleic acids research, 2004. 32(6): p. e55-e55. |