參考文獻 |
1. Zhang, H.P., et al., Collective motion and density fluctuations in bacterial colonies. Proceedings of the National Academy of Sciences, 2010. 107(31): p. 13626.
2. Großmann, R., F. Peruani, and M. Bär, Mesoscale pattern formation of self-propelled rods with velocity reversal. Physical Review E, 2016. 94(5): p. 050602.
3. Farrell, F.D.C., et al., Pattern Formation in Self-Propelled Particles with Density-Dependent Motility. Physical Review Letters, 2012. 108(24): p. 248101.
4. Fily, Y. and M.C. Marchetti, Athermal Phase Separation of Self-Propelled Particles with No Alignment. Physical Review Letters, 2012. 108(23): p. 235702.
5. Abaurrea Velasco, C., et al., Collective behavior of self-propelled rods with quorum sensing. Physical Review E, 2018. 98(2): p. 022605.
6. Vutukuri, H.R., et al., Dynamic self-organization of side-propelling colloidal rods: experiments and simulations. Soft Matter, 2016. 12(48): p. 9657-9665.
7. Theurkauff, I., et al., Dynamic Clustering in Active Colloidal Suspensions with Chemical Signaling. Physical Review Letters, 2012. 108(26): p. 268303.
8. Nishiguchi, D., et al., Long-range nematic order and anomalous fluctuations in suspensions of swimming filamentous bacteria. Physical Review E, 2017. 95(2): p. 020601.
9. Wensink, H.H., et al., Meso-scale turbulence in living fluids. Proceedings of the National Academy of Sciences, 2012. 109(36): p. 14308-14313.
10. Vicsek, T., et al., Novel Type of Phase Transition in a System of Self-Driven Particles. Physical Review Letters, 1995. 75(6): p. 1226-1229.
11. Abkenar, M., et al., Collective behavior of penetrable self-propelled rods in two dimensions. Physical Review E, 2013. 88(6): p. 062314.
12. Torres-Carbajal, A., S. Herrera Velarde, and R. Castaneda-Priego, Brownian motion of a nano-colloidal particle: The role of the solvent. Physical Chemistry Chemical Physics, 2015. 17: p. 19557.
13. McCandlish, S.R., A. Baskaran, and M.F. Hagan, Spontaneous segregation of self-propelled particles with different motilities. Soft Matter, 2012. 8(8): p. 2527-2534.
14. Shi, X.-q. and H. Chaté, Self-Propelled Rods: Linking Alignment-Dominated and Repulsion-Dominated Active Matter. 2018: p. 2-6.
15. Wang, Y.-K., C.-J. Lo, and W.-C. Lo, Formation of spiral coils among self-propelled chains. Physical Review E, 2018. 98(6): p. 062613.
16. Kayser, R.F. and H.J. Raveché, Bifurcation in Onsager′s model of the isotropic-nematic transition. Physical Review A, 1978. 17(6): p. 2067-2072.
17. Duman, Ö., et al., Collective dynamics of self-propelled semiflexible filaments. Soft Matter, 2018. 14(22): p. 4483-4494.
18. Narayan, V., N. Menon, and S. Ramaswamy, Nonequilibrium steady states in a vibrated-rod monolayer: tetratic, nematic, and smectic correlations. Journal of Statistical Mechanics: Theory and Experiment, 2006. 2006(01): p. P01005-P01005.
19. Müller, T., et al., Ordering of granular rod monolayers driven far from thermodynamic equilibrium. Physical Review E, 2015. 91.
20. Zhang, J., B.A. Grzybowski, and S. Granick, Janus Particle Synthesis, Assembly, and Application. Langmuir, 2017. 33(28): p. 6964-6977.
21. Jiang, H.-R., N. Yoshinaga, and M. Sano, Active Motion of a Janus Particle by Self-Thermophoresis in a Defocused Laser Beam. Physical Review Letters, 2010. 105(26): p. 268302.
22. Be′er, A., et al., Periodic reversals in Paenibacillus dendritiformis swarming. Journal of bacteriology, 2013. 195(12): p. 2709-2717.
23. Böttcher, T., H.L. Elliott, and J. Clardy, Dynamics of Snake-like Swarming Behavior of Vibrio alginolyticus. Biophysical journal, 2016. 110(4): p. 981-992.
24. Lin, S.N., W.C. Lo, and C.J. Lo, Dynamics of self-organized rotating spiral-coils in bacterial swarms. Soft Matter, 2014. 10(5): p. 760-6.
25. Turner, L., et al., Visualization of Flagella during Bacterial Swarming. Journal of Bacteriology, 2010. 192(13): p. 3259-3267.
26. Lindbeck, J.C., et al., Aerotaxis in Halobacterium salinarium is methylation-dependent. 1995. 141(11): p. 2945-2953.
27. Krohs, U., Damped oscillations in photosensory transduction of Halobacterium salinarium induced by repellent light stimuli. Journal of bacteriology, 1995. 177(11): p. 3067-3070.
28. Cisneros, L., et al., Reversal of bacterial locomotion at an obstacle. Phys Rev E Stat Nonlin Soft Matter Phys, 2006. 73(3 Pt 1): p. 030901.
29. Harshey, R.M., Bacterial motility on a surface: many ways to a common goal. Annu Rev Microbiol, 2003. 57: p. 249-73.
30. Jeckel, H., et al., Learning the space-time phase diagram of bacterial swarm expansion. 2019. 116(5): p. 1489-1494.
31. Kearns, D.B., A field guide to bacterial swarming motility. Nature reviews. Microbiology, 2010. 8(9): p. 634-644.
32. Sharma, M. and S. Anand, Swarming: A coordinated bacterial activity. Current Science, 2002. 83: p. 707-715.
33. Wu, Y. and H.C. Berg, Water reservoir maintained by cell growth fuels the spreading of a bacterial swarm. Proceedings of the National Academy of Sciences, 2012. 109(11): p. 4128-4133.
34. Darnton, N., et al., Moving fluid with bacterial carpets. Biophysical journal, 2004. 86(3): p. 1863-1870.
35. Ryan, S.D., G. Ariel, and A. Be′er, Anomalous Fluctuations in the Orientation and Velocity of Swarming Bacteria. Biophysical journal, 2016. 111(1): p. 247-255.
36. Nirody, J.A., Y.-R. Sun, and C.-J. Lo, The biophysicist’s guide to the bacterial flagellar motor. Advances in Physics: X, 2017. 2(2): p. 324-343.
37. van Albada, S.B., S. Tănase-Nicola, and P.R. ten Wolde, The switching dynamics of the bacterial flagellar motor. Molecular Systems Biology, 2009. 5(1): p. 316.
38. Morimoto, Y.V. and T. Minamino, Structure and function of the bi-directional bacterial flagellar motor. Biomolecules, 2014. 4(1): p. 217-234.
39. Berg, H.C., The Rotary Motor of Bacterial Flagella. Annual Review of Biochemistry, 2003. 72(1): p. 19-54.
40. Li, N., S. Kojima, and M. Homma, Sodium-driven motor of the polar flagellum in marine bacteria Vibrio. Genes to Cells, 2011. 16(10): p. 985-999.
41. Furuno, M., et al., Characterization of polar-flagellar-length mutants in Vibrio alginolyticus. Microbiology, 1997. 143(5): p. 1615-1621.
42. Belas, R., M. Simon, and M. Silverman, Regulation of lateral flagella gene transcription in Vibrio parahaemolyticus. Journal of Bacteriology, 1986. 167(1): p. 210-218.
43. de Boer, W.E., C. Golten, and W.A. Scheffers, Effects of some chemical factors on flagellation and swarming ofVibrio alginolyticus. Antonie van Leeuwenhoek, 1975. 41(1): p. 385-403.
44. Kojima, M., et al., The bidirectional polar and unidirectional lateral flagellar motors of Vibrio alginolyticus are controlled by a single CheY species. Molecular Microbiology, 2007. 64(1): p. 57-67.
45. Golten, C. and W.A. Scheffers, Marine vibrios isolated from water along the dutch coast. Netherlands Journal of Sea Research, 1975. 9(3): p. 351-364.
46. Cookson, S., et al., Monitoring dynamics of single-cell gene expression over multiple cell cycles. Mol Syst Biol, 2005. 1: p. 2005.0024.
47. Volfson, D., et al., Biomechanical ordering of dense cell populations. 2008. 105(40): p. 15346-15351.
48. Adams, R. and L. Bischof, Seeded region growing. IEEE Transactions on Pattern Analysis and Machine Intelligence, 1994. 16(6): p. 641-647.
49. Narayan, V., S. Ramaswamy, and N. Menon, Long-Lived Giant Number Fluctuations in a Swarming Granular Nematic. 2007. 317(5834): p. 105-108.
50. Ginelli, F., The Physics of the Vicsek model. The European Physical Journal Special Topics, 2016. 225(11): p. 2099-2117.
51. Palacci, J., et al., Living Crystals of Light-Activated Colloidal Surfers. 2013. 339(6122): p. 936-940.
52. Brossard, C., et al., Principles and applications of particle image velocimetry. AerospaceLab, 2009(1): p. p. 1-11. |