參考文獻 |
[1].T. Jiang and L. Wang. (1994) On the complexity of multiple sequence alignment. J. Comp. Biol., 1:337-348.
[2].D. E. Goldberg. (1989) Genetic Algorithms in Search, Optimization, and Machine Learning. Addison-Wesley, New York.
[3].C. Zhang and A. K. C. Wong. (1997) A genetic algorithm for multiple molecular sequence alignment. Comput. Applic. Biosci., 13(6):565-581.
[4].D. Jeanteur, J. H. Lakey, and F. Pattus. (1991) The bacterial porin superfamily: Sequence alignment and structure prediction. Mol. Microbiology, 5:2135-2164.
[5].R. Unger and J. Moult. (1993) Genetic Algorithm for Protein Folding Simulations. J. Mol. Biol., 231:75-81.
[6].A. P. Gultyaev, F. H. D. V. Batenbury and C. W. A. Pleij. (1995) The Influence of A Metastable Structure in Plasmid Primer RNA on Antisence RNA Binding Kinetics. Nucleic Acids Res., 23(18):3718-3725.
[7].J. D. Thompson, D. G. Higgins and T. J. Gibson. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res., 22(22):4673-4680.
[8].C. Korostensky and G. H. Gonnet. (1999) Near Optimal Multiple Sequence Alignments Using a Traveling Salesman Problem Approach. SPIRE, 105-114.
[9].A. Krogh, M. Brown, I. S. Mian, K. Sjolander and D. Haussler. (1994) Hidden markov models in computational biology: applications to protein modeling. J. Mol. Biol., 235:1501-1531.
[10].Gotoh. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162:705-708.
[11].M. S. Waterman. (1984) General methods of sequence comparison. Bull, Math. Biol., 46:473-500.
[12].E. W. Myers and W. Miller. (1988) Optimal alignments in linear space. Comput. Applicat. Biosci., 4(1):11-17.
[13].S. C. Chen, A. K. C. Wong and D. K. Y. Chiu. (1992) A survey of multiple sequence comparison methods. Bull. Math. Biol., 54:563-598.
[14].M. McClure, T. Vasi and W. Fitch. (1994) Comparative analysis of multiple protein sequence alignment methods. J. Mol. Biol., 11(4):571-592.
[15].D. F. Feng and R. F. Doolittle. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. Journal of Molecular Evolution, 25:351-360.
[16].H. Martinez. (1988) A flexible multiple sequence alignment program. Nucleic Acids Res., 16:1683-1691.
[17].W. Taylor. (1987) Multiple sequence alignment by a pairwise algorithm. Comput. Appl. Biosci., 3:81-87.
[18].C. Lawrence, S. Altschul, M. Boguski, J. Liu, A. Neuwald, and J. Wooton. (1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262:208-214.
[19].M. Isokawa, M. Wayama, and T. Shimizu. (1996) Multiple sequence alignment using a genetic algorithm. Genome Informatics, 7:176-177.
[20].C. Notredame and Desmond G. Higgins. (1996) SAGA: sequence alignment by genetic algorithm. Nucleic Acids Res., 24(8):1515-1524.
[21].M. Wayama, K. Takahashi and T. Shimizu. (1995) An approach to amino acid sequence alignment using a genetic algorithm. Genome Informatics, 6:122-123.
[22].J. T. Horng, G.M. Lin and B. J. Liu. (2000) Applying genetic Algorithms to Multiple Sequence Alignment. In Proc. of the Genetic and Evolutionary Computation Conference, Las Vegas, Nevada, 883-890. |