參考文獻 |
陸、參考文獻
刈米孝夫 原著 王鳳英 編譯。1996年。界面活性劑的原理與應用。高立圖書。pp. 25-30,155-245。
童心欣 1996. 甲烷氧化菌的分離與特性的研究。國立成功大學生物學研究所,碩士論文。pp.1-30。
吳岳隆 2001. 利用相減式雜式交法鑑定小葉浮萍受巴拉刈與銅誘之基因。國立中央大學生命科學研究所,碩士論文。pp. 19-21。
林美鳳 2000. 建立苯環化合物分解菌中苯環加氧與切割酵素之基因偵測法。國立中央大學生命科學研究所,碩士論文。pp 25-26。
陳麗玲 Phylogenetic approach of classification of the bacyeria。食品所菌種中心研究員,CCRC News. pp6-9。
楊嘉蓁 2001. Triton X-100分解菌之分離與分解酵素之特性研究。國立中央大學生命科學研究所,碩士論文。pp 36-39,45-51。
Liu, Hsin-Fu. 2001. 國家衛生研究院分子演化分析研習會講義。
Promega technical manual . pGEM-T and pGEM-T Easy Vector System.
Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews. 59:143-169.
Andreas, T., C. Water, G.Muyzer, and N. B. Ramsing. 1996. Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by Most-Probable-Number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Envirm. Microbiol. 62: 1405-1415.
Brown-Howland, E. B., S. A. Danielsen, and S. A. Nierzwicki-Bauer. 1992. Development of a rapid method for detecting bacterial cells in situ using 16S-targeted probes. BioTechniques. 13: 928-933.
Busse, H. J., E. M. B. Denner, and W. Lubitz. 1996. Classfication and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J. Bact. 47: 3-38.
Cindy, H. N., and R. C. Wyndham. 1993. Cloning and expression of the transposable chlorobenzoate-3,4-dioxygenase gene of Alcaligenes sp. Strain BR60. Appl. Envirm. Microbiol. 59: 3625-3633.
Chang, Y.-J., J. R. Stephen, A. P. Richter, A. D. Venosa, J. Bruggemann, S. J. Macnaughton, G. A. Kowalchuk, J. R. Haines, E. Kline, and D. C. White. 2000. Phylogentic analysis of aerobic freshwater and marine enrichment cultures efficient in hydrocarbon degradation: effect of profiling method. Journal. Microbiol Method. 40: 19-31.
Cho, Y.-G., S.-K. Rhee, and S.-T. Lee. 2000. Effect of moisture on bioremediation of chlorophenol-contaminated. Biotechnology letters.
22: 915-919.
Claudia, S.-C., P. Guadalupe, L. Werner, and R. Sabine. 2001. An advanced molecular strategy to identify bacterial communities on art objects. Journal. Microbiol Method. 45: 77-87.
Danilo, E., M. Giancarlo, B. Giuseppe, C. Salvatore. 2001. Behavior of variable V3 region from 16S rDNA of lactic acid bacteria in denaturing gradient gel electrophoresis. Current Microbiol. 42:199-202
Duineveld, B. M., G. A. Kowalchuk, A. Keijzer, J. D. VAN Elsas, and J. A. VAN Veen. 2001. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA as Well as DNA fragments coding for 16S rRNA. Appl. Envirm. Microbiol. 67: 172-178.
Felske, A., A. Wolterink, R. V. Lis, and A. D. L. Akkermans. 1998. Phylogeny of the main bacterial 16S rRNA sequences in drentse a grassland soils (The Netherlands). Appl. Envirm. Microbiol. 64: 871-879.
Ferris, M. J., G. Muyzer, and D. M. Ward. 1996 Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Envirm. Microbiol. 62: 340-346.
Friedrich, M., R. J. Grosser, E. A. Kern, W. P. Inkeep, and D. M. Ward. 2000. Effect of model sorptive phase on phenanthrene biodegradation: molecular analysis of enrichments and isolates suggest selection based on bioavailability. Appl. Envirm. Microbiol. 66: 2703-2710.
Griffiths, R. I., A. S. Whiteley, A. G. O’’Donnell, and M. J. Bailey. 2000. Rapid method for coextraction of DNA and RNA form natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition. Appl. Envirm. Microbiol. 66: 5488-5491.
Head, I.M., J.R. Saunders, and R.W.Pickup. 1998. Microlbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms. Microbiol Ecol. 35: 1-21.
Hideaki, M., M. Naoto, F. Yasuhiro. 1994. Degradation of alklphenol ethoxylates by Pseudomonas sp. Strain TR01. Appl. Envirm. Microbiol. 60: 2265-2271.
Ingela, D., B. Harriet, and K. Staffan. 2000. rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity. Appl. Envirm. Microbiol. 66: 3376-3380.
Jensen, S., L. Øvreas, F. L. Daae, and V. Torsvik. 1998. Diversity in methane enrichments from an agricultural soil revealed by DGGE separation of PCR amplified 16S rDNA fragments. FEMS Microbiol Ecol. 26: 17–26.
Juck, D., T. Charles, L. G. Whyte, C. W. Greer. 2000. Polyphasic microbial community analysis of Petroleum hydrocarbon-contaminated soils from two northern Canadian. FEMS Microbiol Ecol. 33: 241-249.
Laurent, V., V. Fievez, L. Van Vooren, and W. Verstraete. 1997. The contribution of individual populations to the BIOLOG pattern of model microbial communities. FEMS Microbiol Ecol. 24: 353–362.
Marc, B., L. G. Whyte, and C. W. Greer. 1996. Rapid direct extraction of DNA from soil for PCR analysis using polyvinylpolypyrrolidone spin columns. FEMS Microbiol . lett. 138: 17-22.
Mccaig, A. E., L. A. Glover, and J. I. Prosser. 2001. Numerical analysis of grassland bacterial community structure under different land management regimens by using 16S ribosomal DNA sequence data and denaturing gradient gel electrophoresis banding patterns. Appl. Envirm. Microbiol. 67: 4554-4559.
Muyzer, G., E. C. Dewaal, and A. G. Uitterlinden. 1993. Profiling old complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Envirm. Microbiol. 59: 695-700.
Nguyen, M. H., and J-C. Sigoillot. Isolation from coastal sea water and characterization of bacterial strains involved in non-ionic surfactant degradation. Biodegradation. 7:369-375.
Nielsen, A. T., W-T. Liu, C. Filipe, C. Filipe, L. Grady, S. Molin, and D. A. Stahl. 1999. Identification of a nolvel group of bacteria in sludge from a deteriorated biological phosphous removal reacter. Appl. Envirm. Microbiol. 65: 1251-1258.
O’Donnell, A. G, and H. E.Gorres. 1999. 16S rDNA method in soil microbiology. Environmental biotechnology. 10: 225-229.
Okeke, B. C., J. E. Smith, A. Paterson, and W.-C. Ia. 1996. Influence of environmental paraments on pentachlorophenol biotransformation in soil by Lentinula edodes and phanerochaete chrysosporium. Applied. Microbiol. Biotech. 45: 263-266.
Petrovic, M., and D. Barcelo. 2000. Determination of anionic and nonionic surfactants, their degration products, and endocrine-disrupting compounds in sewage sludge by liquid chromatography/mass spectrometry. Anal chem. 72: 4560-4567.
Roling, W. F. M., B. M. van Breukelen, M. Braster, B. Lin, and H. W. van Versevled. 2001. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl. Envirm. Microbiol.67: 4619-4629.
Sabine, R., M. Gerard, W. Cathrin, W. Gerhard, and L. Werner. 1996. Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Envirm. Microbiol. 62: 2059-2065.
Said, E. F., L. Verschuere, and W. Verstraete, Mar. 1999. Effect of phenyl urea herbicides of 16S rRNA gene fingerprints and community-level physiological profiles. Appl. Envirm. Microbiol. 64: 982-988.
Satokari, R. M., E. E. Vaughan, A. L. Akkermans, M. Saarela, and W. M. DE Vos. 2001. Bifidobacterial diversity in human feces detected by genus-specific PCR and denaturing gradient gel electrophoresis. Appl. Envirm. Microbiol. 67: 504-513.
Snaider, J., B. Fuchs, G, Wallner, M. Wagner, M. Schleifer, and K.-H. Amann. 1999. Phylogeny and in situ identification of a morphologically conspicuous bacterium, Candidatus Magnospira bakii, present at very low frequency in activated sludge. Environ. Microbiol. 1: 125-135.
Stanier, R. Y. G., C. Bazire, and W. R. Sistrom. 1957. Kinetics studies of pigment synthesis by non-sulfur purple bacteria. Journal. Cell. Comp. Physiol. 49: 25.
Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Envirm. Microbiol. 62: 625–630.
Thilo, H., F. Michael, and C. Ralf. 1999. Molecular analysis of the methane-oxidizing microbial communities in rice field soil by targeting the genes of the 16S rRNA, particulate methane monooxygenase, and methanol dehydrogenase. Appl. Envirm. Microbiol.65: 1980-1990.
Trveors, J. H. 1995. Extraction and amplification of 16S rDNA genes from deep marine sediments and seawater to assess bacterial community diversity. pp.220-222. IN Nucleic acid in the environment: methods and applications. J. D. van Elsas (Eds.) Springer, D. C.
Ulrich, N., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H, Backhaus. 1996. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyax detered by temperature gradient gel electrophoresis. Journal of Bacteriology. 178: 5636-5643.
Vincent, F., F. A. Rainey, and E. Stackebrandt. 1995.
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA gene from a mixture of bacterial species. Appl. Envirm. Microbiol. 61: 2798-2801.
Ward, D. M., R. Weller, and M. M. Bateson. 1990. 16S rDNA sequences reveal numerous uncultured microorganisms in a natural community. Nature. 344:63-65.
Wardle, D. A., and D. Parkinson. 1990. Effects of three herbicides on soil microbial biomass and activity. Plant Soil. 122: 21–28.
Yang, C.-H., D.E. Crowley, and J.A. Menge. 2001. 16S rDNA fingerprinting of rhizosphere bacterial communities associated with healthy and Phytophthora infected avocado roots. FEMS Micro Ecol. 35: 129-136.
Zeyer, J., A. Wasserfallen, and K. N. Timmis. 1985. Microbial mineralization of ring-substituted anilines through an ortho-cleavage pathway. Appl. Envirm. Microbiol. 2: 447-453. |