參考文獻 |
[1] Laurent Falquet, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J. A. Sigrist, Kay Hofmann, and Amos Bairoch “The PROSITE database, its status in 2002”. Nucl. Acids. Res. 2002 30: 235-238.
[2] K Hofmann, P Bucher, L Falquet, and A Bairoch. "The PROSITE database, its status in 1999". Nucl. Acids. Res. 1999, 27: 215-219.
[3] A Bairoch, P Bucher, and K Hofmann. “The PROSITE database, its status in 1997”. Nucl. Acids. Res. 1997 25: 217-221.
[4] A Bairoch, P Bucher, and K Hofmann. “The PROSITE database, its status in 1995”. Nucl. Acids. Res. 1996 24: 189-196.
[5] Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Kevin L. Howe, and Erik L. L. Sonnhammer . "The Pfam Protein Families Database". Nucl. Acids. Res. 2000, 28: 263-266.
[6] T. K. Attwood, M. J. Blythe, D. R. Flower, A. Gaulton, J. E. Mabey, N. Maudling, L. McGregor, A. L. Mitchell, G. Moulton, K. Paine, and P. Scordis. "PRINTS and PRINTS-S shed light on protein ancestry". Nucl. Acids. Res. 2002, 30: 239-241.
[7] Amos Bairoch and Rolf Apweiler. "The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000". Nucl. Acids. Res. 2000, 28: 45-48.
[8] Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, and Cyrus Chothia . "SCOP: a Structural Classification of Proteins database". Nucl. Acids. Res. 2000, 28: 257-259.
[9] R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M. D. R. Croning, R. Durbin, L. Falquet, W. Fleischmann, J. Gouzy, H. Hermjakob, N. Hulo, I. Jonassen, D. Kahn, A. Kanapin, Y. Karavidopoulou, R. Lopez, B. Marx, N. J. Mulder, T. M. Oinn, M. Pagni, F. Servant, C. J. A. Sigrist, and E. M. Zdobnov. "InterPro-an integrated documentation resource for protein families, domains and functional sites". Bioinformatics. 2000, 16: 1145-1150.
[10] A Elofsson and EL Sonnhammer . "A comparison of sequence and structure protein domain families as a basis for structural genomics". Bioinformatics. 1999, 15: 480-500.
[11] Ernst Kretschmann, Wolfgang Fleischmann, and Rolf Apweiler. "Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT". Bioinformatics. 2001, 17: 920-926.
[12] SR Eddy. "Profile hidden Markov models". Bioinformatics. 1998, 14: 755-763.
[13] Rakesh Agrawal, Tomasz Imielinski, and Arun Swami, "Mining association rules between sets of items in large databases", in Proc. of the ACM SIGMOD Conference on Management of Data, 1993
[14] M. Klemettinen, H. Mannila, P. Ronkainen, H. Toivonen, and A. I. Verkamo, "Finding Interesting Rules from Large Sets of Discovered Association Rules", CIKM, 1994, 401-407.
[15] F.C. Tseng and C.C. Hsu, "Generating Frequent Patterns with the Frequent Pattern List", PAKDD 2001
[16] S. J. Wheelan, A. Marchler-Bauer, and S. H. Bryant. "Domain size distributions can predict domain boundaries". Bioinformatics. 2000, 16: 613-618.
[17] Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, and Winona C. Barker. “The Protein Information Resource: an integrated public resource of functional annotation of proteins”. Nucleic Acids Res. 2002, 30,35-37.
[18] John Westbrook, Zukang Feng, Shri Jain, T. N. Bhat, Narmada Thanki, Veerasamy Ravichandran, Gary L. Gilliland, Wolfgang Bluhm, Helge Weissig, Douglas S. Greer, Philip E. Bourne and Helen M. Berman. “ The Protein Data Bank: unifying the archive”. Nucleic Acids Res. 2002, 30,245-248.
[19] K Karplus, C Barrett, and R Hughey. “Hidden Markov models for detecting remote protein homologies”. Nucleic Acids Res. 1998, 14,846-856.
[20] Pearl, F.M.G, Lee, D., Bray, J.E, Sillitoe, I., Todd, A.E., Harrison, A.P., Thornton, J.M. and Orengo, C.A. “Assigning genomic sequences to CATH” Nucleic Acids Res. 2000, 1. 277-282 |