| 參考文獻 |
[1] Emerging Infectious Diseases, Review of State and Federal Disease Surveillance Efforts.GAO-04-877. Washington, D.C.: September 30, 2004.
[2] Infectious Disease Preparedness, Federal Challenges in Responding to Influenza Outbreaks. GAO-04-1100T. Washington, D.C.: September 28, 2004.
[3] Emerging Infectious Diseases, Asian SARS Outbreak Challenged International and National Responses. GAO-04-564. Washington, D.C.: April 28, 2004.
[4] Public Health Preparedness, Response Capacity Improving, but Much Remains to Be Accomplished. GAO-04-458T. Washington, D.C.:February 12, 2004.
[5] Infectious Diseases, Gaps Remain in Surveillance Capabilities of State and Local Agencies. GAO-03-1176T. Washington, D.C.: September 24, 2003.
[6] Kåre Andersson ,“Encoding Chemical Information into Bit-Strings for the Purpose of Virtual Screening”, Göteborgs Universitet, Sweden - Department of Theoretical Chemistry , Thesis, pp.132-146,Nov.7,2004
[7]Pegg SC, et. al. “A genetic algorithm for structure-based de novo design.” ,Journal Comput Aided Mol Des. 2001;Vol.15,pp.911–933.
[8]Camila S. et. al. “A genetic algorithm for the ligand-protein docking problem”, Genetics and Molecular Biology, Vol.27, No.4, pp.605-610, 2004
[9] N.K.,Shah, P.A.Rejto, and G.M.Verkhivker, “Structural Consensus in Ligand-Protein Docking Identifies Recognition Peptide Motifs that Bind Streptavidin,” Proteins: Structure, Function and Genetics, Vol. 28, pp. 421-433, 1997.
[10] R.S. Merkle, “A Genetic Algorithm Based Method for Docking Flexible Molecules,” Journal of Molecular Structure, Vol.308, pp.191-206, 1994.
[11] B.S. Sinha, “Predicting Protein-Protein Interaction Using Parametric Surfaces,” Paper presented at the 13th Annual Conference of the Molecular Graphics Society: Molecular Graphics at the Frontier, Evanston (IL), U.S.A., July 1994. (An abstract of this paper was published in Chemical Design Automation News 1994, July, 35).
[12] J.S. Singh, “Flexible Docking of Ligands to Receptor Sites using Genetic Algorithms. In Wermuth,” C.G. (Ed.), Trends in QSAR and Molecular Modelling, Vol.92, ESCOM, Leiden, pp. 412-413,1993.
[13] A.,Hellinga, H.,Richards, “Multiple Conformation and Protonation State Representation in 4D-QSAR: The Neurokinin-1 Receptor System.” J. Med. Chem., Vol.43, 2000.
[14] Shih-Ching Ou, Hung-Yuan Chung, Wen-Tsai Sung, Chun-Yen Chung, “Using Directivity Genetic Algorithms to Geometry Search and Conformational Stability for improving molecular simulation techniques,” WSEAS Transactions on Mathematics and Computers in Biology and Biomedicine, Issue 4, Volume 3, pp.291-296, April ,2006
[15] M.,. Alerts, “Quasi-Atomistic Receptor Surrogates for the 5-HT2A Receptor: A 3D-QSAR Study oon Hallucinogenic Substances,” Quant. Struct.-Act. Relat., Vol. 18, pp.548-560,1999.
[16] M.,. Alerts, “Quasi-Atomistic Receptor Modeling: A Bridge Between 3-D QSAR and Receptor Modeling,” Pharm. Acta Helv., Vol.73, pp.11-18, 1998.
[17] D.E..Schnecke, “Genetically Evolved Receptor Models (GERM): A Comparison of Evolved Models with Crystallographically Determined Binding Sites,” Alfred Benzon Symposium, Vol.42, pp.101-114, 1998.
[18] Shih- Ching Ou, Chun- Yen Chung, Wen-Tsai Sung ,Chia - Chih Tsai, Chin - Chih Chien, and Da -Yu Su,” Virtual Screening and Computer-aided Drug Design in Molecular Docking via Lyapunov Function,” WSEAS Transactions on Biology and Biomedicine , Issue 4,Vol. 01, pp.384-390, Oct. 2004.
[19] Shih-Ching Ou, Wen-Tsai Sung, Chun-Yen Chung, “Study on Molecular Docking for Computer-Aided Drug Design via Lyapunov Equation and Minimum Energy,” Information Visualization, Palgrave Macmillan Ltd. Vol. 7, No. 1, pp.210-220, 2005.
[20] Zhou, David, “A Genetic Evolved Algorithm to Predict Bioactivity,” Journal of Chemical Information and Computer Sciences, Vol.38, pp.243-250,1998.
[21] J. Denical, “Receptor Mapping used for Predicting Bioactivity,” J. Chin. Pharm. Sci.,Vol. 6, pp.149-153,1997.
[22] T.R. Abraham, “A New QSAR Research Method Based on Genetic Algorithm,” Chinese Chem. Letters, Vol.8, pp.975-978, 1997.
[23] Shih-Ching Ou, Chun-Yen Chung, Hung-Yuan Chung, Wen-Tsai Sung ,Chien-Chin Cheng, “Molecular Docking for Protein Folding Structure and Drug-likeness Prediction,” WSEAS International Journal on Biology and Biomedicine, Issue 1, Volume 2, pp.57-63, January 20-22 ,2005.
[24]Shih-Ching Ou, Wen-Tsai Sung, Hung-Yuan Chung, Chun-Yen Chung,” Determine Global Energy Minimum Solution via Lyapunov Direct and Indirect Methods” Internet and Multimedia Systems and Applications Conference (IMSA 2005),Noverber,11-15,2005,pp203-209
[25] D.E.Walters, and T.D.Muhammad, “Genetically Evolved Receptor Models (GERM): A Procedure for Construction of Atomic-Level Receptor Site Models in the Absence of a Receptor Crystal Structure,” In: Devillers, J. (Ed.) Genetic Algorithms in Molecular Modelling, Academic Press, pp. 193-210, 1996.
[26] M.D.,Miller, E.M.,Fluder, L.A.,Castonguay, J.C.,Culberson, R.T.,Mosley, K.,Prendergast, S.K.Kearsley, and R.P.Sheridan, MEGA-SQ,”A Method using the SQuEAL Function to Find the Optimal Superposition of Several Quasi-Flexible Molecules,” Med. Chem. Res. ,Vol. 9, pp.513-534,1999.
[27] S.Handschuh, and J.Gasteiger, “Pharmacophores Derived from the 3D Substructure Perception,” IUL Biotechnology Series 2 (Pharmacophore), pp. 431-453, 2000.
[28] I.J.McFadyen, et al. “The Steroid SC17599 is a Selective mu-Opioid Agonist: Implications for the mu-Opioid Pharmacophore,” Mol. Pharmacol. , Vol.58, pp.669-676, 2000.
[29] S.Handschuh, and J.Gasteiger, “The Search for the Spatial and Electronic Requirements of a Drug,” J. Mol. Modell.,Vol. 6, pp.358-378, 2000.
[30] L.,Leherte, N.Meurice, and D.P.Vercauteren, “Critical Point Representations of Electron Density Maps for the Comparison of Benzodiazepine-Type Ligands,” J. Chem. Inf. Comput. Sci. ,Vol.40, pp.816-832, 2000.
[31] G. Jones, and P. Willett, GASP, “Genetic Algorithm Superimposition Program,” IUL Biotechnology Series 2 (Pharmacophore), pp. 85-106, 2000.
[32] Wen-Tsai Sung, Shih-Ching Ou,” Integrating Network, CAD and VR into the Design and Development of Web-Based Computer Graphics Learning Materials,” Journal of Computer Science, Vol.14, No.2, pp.47-63, Dec.2001.
[33] Sung-Jung Hsiao, Wen-Tsai Sung, and Shih-Ching Ou ,” Web-based search system of pattern recognition for the pattern of industrial component by an innovative technology,” Computer in Industry Journal, Elsevier Company, Vol. 53, Issue 2 , pp. 179-192, Feb.2004.
[34] Wen-Tsai Sung, Shih-Ching Ou,” Using Virtual Reality technologies for Manufacturing Applications, ” International Journal of Computer Applications in Technology, Inderscience Enterprises Ltd., Vol.17, No. 4, pp. 213-219, 2003.
[35] Wen-Tsai Sung, Shih-Ching Ou, "Web-Based Learning in CAD Curriculum Sculpture Curves and Surface", International Journal of Computer Assisted Learning, Blackwell Science Publishers, Vol.18, No.1,pp.175-187, June 2002.
[36] Wen-Tsai Sung, Shih-Ching Ou , Sung-Jung Hsiao, "Interactive Web-based Training Tool for CAD in a Virtual Environment ".Journal of Computer Applications in Engineering Education, John Wiley & Sons, Inc. Vol. 10, Issue 4, pp. 182-193. 2002 .
[37] Wen-Tsai Sung, Shih-Ching Ou, "Learning Computer Graphics using Virtual Reality Technologies Based on Constructivism" ,Interactive Learning Environments International Journal, Swets & Zeitlinger Publisher,Vol.10 No.3 , pp.177-197, 2000.
[38] Shih-Ching Ou, Wen-Tsai Sung , Sung-Jung Hsiao, "Study on the Wireless and Virtual Reality Technology ---Based on Web DeGrator System", Journal of Internet Technology, Computer Center ,National Dong Hwa University, Vol. 3, No. 4, pp. 257-266, 2002.
[39] Shih-Ching Ou, Hung-Yuan Chung,Wen-Tsai Sung, “Development of a computer aided geometric design system based on parallel architecture, ” WSEAS Transactions on Computers, Issue 2, Volume 5, pp.278-284, February,2006
[40] Shih-Ching Ou, Hung-Yuan Chung ,Wen-Tsai Sung, ” Enhancing Compression and Encryption of image with FPGA-based”, Multimedia Tools and Applications. Kluwer academic publishers, vol. 28, no. 1, January 2006.
[41] Chun-Yen Chung, Shih-Ching Ou , Chia-Chih Tsai, Wen-Tsai Sung ,“Application of Minimum Energy to Protein Structure Prediction and Drug Design,” Presented at 2004 Chineseand Japan Molecular Design, Nanotechnology and Drug Transmission Conference IRC Biology Medical Center,2004.
[42] Shih- Ching Ou , Jeng-An Liaw , Chun- Yen Chung , Chia -Chih Tsai，Wen-Tsai Sung , Chin - Chih Chien and Da -Yu Su, “ Design and Implementation of Wireless Web-Service Technology Based on Java, ” Presented at 2004 Symposium on Digital Life and Internet Technologies, National Cheng Kung University, 2004.
[43] Chun - Yen Chung, Shih - Ching Ou, Chia - Chih Tsai, Wen-Tsai Sung, Chin – Ch Chien, and Da-Yu Su “ Application of Molecular Docking to Protein Folding Structure Prediction and Drug Discovery ” International Proteomics Conference (IPC’03), In the Grand Hotel on May 14-17, 2004 in Taipei, Taiwan
[44] Chia-Chih Tsai ,Chun-Yen Chung, Shih-Ching Ou, Wen-Tsai Sung “Predict protein structure and similar function via 3D Visualization tools- case study of bamboo shoot,” 2004 IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE2004) , IEEE Computer Society Press, May 19-21, 2004, Taichung, Taiwan, ROC.
[45] Chia- Chih Tsai, Shih- Ching Ou , Chun- Yen Chung , Wen-Tsai Sung, Chin Ch Chien, and Da Yu Su “ Predict protein structure and similar function via 3D Visualization tools-case study of bamboo shoot ” International Proteomics Conference(IPC’03), In the Grand Hotel on May 14-17, 2004 in Taipei, Taiwan.
[46] Wen-Tsai Sung, Shih-Ching Ou,” Minimum Energy for Protein Folding Structure via Lyapunov Equation Molecular Dynamics,” Symposium and Workshop of Bioinformatics in Taiwan 2003,Taipei,Tawan.5-7 Sept.2003.
[47] Shih-Ching Ou，Wen-Tsai Sung,” Molecular Docking for Drug Design,” Symposium and Workshop of Bioinformatics in Taiwan 2003,Taipei,Taiwan. 5-7 Sept.2003.
[48] G.,Jones, P.Willett, and R.C.Glen, “A Genetic Algorithm for Flexible Molecular Overlay and Pharmacophore Elucidation,” Journal of Computer-Aided Molecular Design ,Vol. 9, pp.532-549,1995
[49] J.-M. Yang, T.-W. Shen, “A pharmacophore-based evolutionary approach for screening selective estrogen receptor modulators,” Proteins: Structure, Function, and Bioinformatics, vol. 59, pp. 205-220, 2005.
[50] D.J.Wild, and P.Willett, “Field-Based Similarity Searching in Databases of Three-Dimensional Chemical Structures,” Proceedings of the International Chemical Information Conference, Nimes, France, pp.19-22 October, 1997.
[51] Venkatachalam, C.M., Jiang, X., Oldfield, T., and Waldman, M.,"LigandFit: A Novel Method for the Shape-Directed Rapid Docking of Ligands to Protein Active Sites," J. Mol. Graph. Modell., 2003, 21, 289-307.
[52] Ji, H., Zhang, W., Zhang, M., Kudo, M., Aoyama, Y., Yoshida, Y., Sheng, C., Song, Y., Yang, S., Zhou, Y., Lu, J., and Zhu, J., "Structure-Based de Novo Design, Synthesis, and Biological Evaluation of Non-Azole Inhibitors Specific for Lanosterol 14r-Demethylase of Fungi," J. Med. Chem., 2003, 46, pp.474-485.
[53] Jones et. al. “The QSAR Paradigm in the Design of Less Toxic Molecules”. Drug Metab. Rev., 15: 1279-1294. 1985
[54] Randall E. Burton et. al.” The energy landscape of a fast-folding protein mapped by Ala Gly Substitutions”, Nature Structural Biology, Vol. 4, 305 - 310 ,1997
[55] Meng, E.C., Shoichet, B.K., and Kuntz, I.D. “ Automated Docking with Grid-Based Energy Evaluation.” J. Comput. Chem., 13: pp.505-524.1998
[56] Booth, P.J., Templer, R.H., Meijberg, W., Allen, S.J., Curran, A.R., and Lorch, M. “In vitro studies of membrane protein folding.” Crit. Rev. Biochem. Mol. Biol. 36: pp.501-603.2001
[57] M.G.B.,Drew, G.R.H.,Wilden, W.J.,Spillane, R.M.,Walsh, C.A.Ryder, and J.M. Simmie, “Quantitative Structure-Activity Relationship Studies of Sulfamates RNHSO3Na: Distinction Between Sweet, Sweet-Bitter, and Bitter Molecules,” J. Agric. Food Chem., Vol.46, pp.3016-3026,1998.
[58] Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., Karplus, M. “CHARMM: A program for macromolecular energy, minmimization, and dynamics calculations”. J. Comp. Chem. 4, pp.187-217.1983
[59] Damm, W., A. Frontera, J. Tirado-Rives and W. L. Jorgensen "OPLS All-Atom Force Field for Carbohydrates," J. Comp. Chem. 18, pp.1955-1970.2003
[60] Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M. Jr., Ferguson, D. M. Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. “A second generation force field for the simulation of proteins, nucleic acids and organic molecules, ”J. Am. Chem. Soc. 117, pp.5179-5197.2004
[61] Hansch, C. “Drug Research or the Luck of the Draw”. J. Chem. Ed., 51: 360-365.1974
[62] W.,Linert, P.Margl, and E. Nusterer, “The Use of Enhanced Operator-machine Interfaces in Computer-aided Molecular Design,” Comput. Chem., Vol.15, pp. 1-10, 1991.
[63] T.J.,Hou, J.,Wang, Y.Y.Li, and X.J.Xu, “Application of Genetic Algorithm to the QSAR Research of Pyrrolobenzothiazepinones and Pyrrolobenzoxazepinones: Novel and Specific Non-nucleoside HIV-1 Reverse Transcriptase Inhibitors,” Chin. Chem. Lett., Vol.9, pp.651-654, 1998.
[64]M.G.,Albuquerque, A.J., Hopfinger, E.J.Barriero, and R.B.Alencastro, “Four Dimensional Quantitative Structure-Activity Relationship Analysis of a Series of Interphenylene 7-oxabicycloheptane Oxazole Thromboxane A2 Receptor Antagonists,” Journal of Chemical Information and Computer Sciences, Vol.38, pp.925-938.1998.
[65] Y.Tominaga, “Novel 3-D Descriptors Using Excluded Volume. 2. Application to Drug Classification,” Journal of Chemical Information and Computer Sciences, Vol.38, pp.1157-1160, 1998.
[66] Ullman J.R. (1976) An algorithm for subgraph isomorphism. J. Assoc. Comput. Mach., 23, 31–42.
[67] J. Hespanha, D. Liberzon, E. Sontag. “Nonlinear observability and an invariance principle for switched systems,” In Proc. 41th Conf. on Decision and Control, Dec. 2002.
[68] J. Hespanha, D. Liberzon, A. S. Morse. “Overcoming the limitations of adaptive control by means of logic-based switching,” Syst. & Contr. Lett., Vol.49,No. 1: pp.49-65, Apr. 2003.
[69] S. Boyd, L. El Ghaoui, E. Feron, V. Balakrishnan. “Linear Matrix Inequalities in System and Control Theory.” SIAM, 1994.
[70] D. Liberzon, A. S. Morse, “Basic problems in stability and design of switched systems,” IEEE Control Systems Magazine, Vol. 19, No. 5, pp. 59-70, Oct. 1999.
[71] Ian A. Hiskens et. al.” Lyapunov Function Analysis of Power Systems with Dynamic Loads “Proceedings of the 35th Conference on Daoision end Control Koba, Japan l December 1996. pp.231-236
[72] R.J. Davy and I.A. Hiskens, “Lyapunov functions for multi-machine power systems with dynamic loads”, Technical Report No. EE9472, Department of Electrical and Computer Engineering, The University of Newcastle, IEEE Trans. on Circuits and Systems, 23(4) pp.167-173 ,December 1994
[73] J. Hespanha. “Root-Mean-Square Gains of Switched Linear Systems,” IEEE Trans. on Automat. Contr., Vol.48, No.11,pp.364-376, Nov. 2003.
[74] G. Bhanuprakash Reddy et. al. “Linear free-energy model description of the conformational stability of uracil-DNA glycosylase inhibitor” European Journal of Biochemistry, Volume 261 Issue 3 pp. 610 -620 May (I) 1999
[75] G. Kresse and J. Furthmüller, “Efficiency of Ab-Initio Total Energy Calculations for Metals and Semiconductors Using a Plane-Wave Basis Set,” Computational Material Science 6, 15–50 ,1996.
[76] C. A. Laughton, “A Study of Simulated Annealing Protocols for Use with Molecular Dynamics in Protein Structure Prediction,” Protein Engineering 7, 235–241,1994.
[77] T. P. Lybrand, “Ligand-Protein Docking and Rational Drug Design,” Current Opinion in Structural Biology 5, 224–228 (1995).
[78] J. M. Blaney and J. S. Dixon, “A Good Ligand Is Hard to Find: Automated Docking Method,” Perspectives in Drug Discovery and Design 1, 301–319 (1993).
[79] Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. The Protein Data Bank. Nucleic Acids Res., 28, 235–242,2000
[80] Kanehisa, M., Goto, S., Kawashima, S., and Nakaya, A. The KEGG databases at GenomeNet. Nucleic Acids Res. 30, 42-46.2002
[81] Muegge, I., and Martin, Y.C., "A General and Fast Scoring Function for Protein-Ligand Interactions: A Simplified Potential Approach," J. Med. Chem., 1999, 42, pp.791-804.
[82] Diane Joseph-McCarthy et. al.,”Automated generation of MCSS-derived pharmacophoric DOCK site points for searching multiconformation databases”, Proteins: Structure, Function, and Genetics, Volume 51, Issue 2 , pp. 189 - 202
[83] B.T.Luke, “Application of Genetic Methods to Substructure Searches,” Paper presented at the 209th ACS National Meeting, Anaheim (CA), U.S.A., April 1995.
[84] J.S.Taylor, and R.M.Burnett, “DARWIN: A Program for Docking Flexible Molecules,” Proteins, Vol. 41, pp.173-191, 2000.
[85] J.-M.Yang, and C.-Y.Kao, “Flexible ligand docking using a robust evolutionary algorithm,” J. Comput. Chem., Vol. 21, pp.988-998, 2000.
[86]E.J.,Gardiner, P.Willett, and P.J.Artymiuk, “Protein Docking Using a Genetic Algorithm,” Proteins, Vol. 44, pp. 44-56, 2001.
[87] M.,Del Carpio, C.Adriel, and A.Yoshimori, “MIAX: A System for Assessment of Macromolecular Interaction.-Part 3: A Parallel Hybrid GA for Flexible Protein Docking,” Genome Inf. Ser., Vol.11, pp.205-214, 2000.
[88] Pique, J. P.” Molecular dynamics and quantum chaos in small polyatomic molecules (CS2, C2H2) through stimulated-emission pumping experiments and statistical Fourier transform analysis”, Journal of the Optical Society of America B: Optical Physics, Volume 7, Issue 9, September 1990, pp.1816-1828
[89] Preben H. Olesen et.al. ” A New Class of Selective GSK-3 Inhibitors” J. Med. Chem., 2003, Volume 46, Issue 15; pp3333-3341
[90] Huang et. al. “An approach to vanilloid-based adrenergic antagonist. “Chinese Chemical Society 98’ (Poster presentation),1998
[91] Rong Chen, Julian Mintseris, Joe Janin, and Zhiping Weng, “A Protein–Protein Docking Benchmark”, Proteins: Structure, Function, and Genetics, 52:88–91 (2003) |
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