參考文獻 |
陸、參考文獻
洪國展. 2004. 分解辛基苯酚聚氧乙基醇之耗氧酵素(二氫硫醯胺脫氫酶)的純化與定性. 國立中央大學生命科學所碩士論文
邱凡峰. 2005.以功能性蛋白質體學研究Pseudomonas nitroreducens TX1生長於辛基苯酚聚氧乙基醇之代謝與逆境反應. 國立中央大學生命科學所碩士論文
徐秉正. 2003. Psedomonas nitroreducens TX1異化辛基苯酚聚氧乙基醇之功能性蛋白質體學:以二維電泳法分析等電點4-8之蛋白質表現. 國立中央大學生命科學所碩士論文
楊嘉蓁. 2001. Triton-100分解菌之分離與分離酵素之特性研究. 國立中央大學生命科學所碩士論文
Benen, J.A. W.J. van Berkel, W.M. van Dongen, F. Muller, and A. De Kok. 1989 Molecular cloning and sequence determination of the lpd gene encoding lipoamide dehydrogenase from Pseudomonas fluorescens. J Gen Microbiol 135:1789-97.
Bentley, S.D., K.F. Chater, A.M. Cerdeno-Tarraga, G.L. Challis, N.R. Thomson, K.D. James, D.E. Harris, M.A. Quail, H. Kieser, D. Harper, A. Bateman, S. Brown, G. Chandra, C.W. Chen, M. Collins, A. Cronin, A. Fraser, A. Goble, J. Hidalgo, T. Hornsby, S. Howarth, C.H. Huang, T. Kieser, L. Larke, L. Murphy, K. Oliver, S. O’Neil, E. Rabbinowitsch, M.A. Rajandream, K. Rutherford, S. Rutter, K. Seeger, d. Saunders, S. Sharp, R. Squares, S. Squares, K. Taylor, T. Warren, A. Wietzorrek, J. Woodward, B.G. Barrell, j. Parkhill, and D.A. Hopwood. 2002. Complete genome sequence of the model actinomycete Streptomyces codlicolor A3(2). Nature 417:141-7.
Bergey, D. H., J.G. Holt, and N.R. Krieg. 1989. Bergey's manual of systematic bacteriology. Baltimore Williams & Wilkins c1984-c1989.
Blattner, F.R., G. Plunkett, C.A. Bloch, N.T. Perna, V. Burland, M. Riley, J. Collado-Vides, J.D. Glasner, C.K. Rode, G.F. Mayhew, J. Gregor, N.W. Davis , H.A. Kirkpatrick, M.A. Goeden, D. J. Rose, B. Mau, and Y. Shao.1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-74.
Brand, N., G. Mailhot, and M. Bolte. 1998. Degradation photoinduced by Fe(III): method of alkylphenol ethoxylates removal in water. Environ Sci Technol 32:2715-20.
Buell, C. R., V. Joardar, M. Lindeberg, J. Selengut, I. T. Paulsen, M. L. Gwinn, R. J. Dodson, R. T. Deboy, A. S. Durkin, J. F. Kolonay, R. Madupu, S. Daugherty, L. Brinkac, M. J. Beanan, D. H. Haft, W. C. Nelson, T. Davidsen, N. Zafar, L. Zhou, J. Liu, Q. Yuan, H. Khouri, N. Fedorova, B. Tran, D. Russell, K. Berry, T. Utterback, S. E. Van Aken, T. V. Feldblyum, M. D'Ascenzo, W. L. Deng, A. R. Ramos, J. R. Alfano, S. Cartinhour, A. K. Chatterjee, T. P. Delaney, S. G. Lazarowitz, G. B. Martin, D. J. Schneider, X. Tang, C. L. Bender, O. White, C. M. Fraser, and A. Collmer. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proc Natl Acad Sci U S A 100:10181-6.
Cao, Z., and P. E. Klebba. 2002. Mechanisms of colicin binding and transport through outer membrane porins. Biochimie 84:399-412.
Carothers, D. J., G. Pons, and M. S. Patel. 1989. Dihydrolipoamide dehydrogenase: functional similarities and divergent evolution of the pyridine nucleotide-disulfide oxidoreductases. Arch Biochem Biophys 268:409-25.
Chen, P., M. A. Pickard, and M. R. Gray. 2000. Surfactant inhibition of bacterial growth on solid anthracene. Biodegradation 11:341-7
Cheng, C., N. Kacherovsky, K.M. Dombek, S. Camier, S.K. Thukral, E. Rhim, and E.T. Young. 1994. Identification of potential target genes for Adrlp through characterization of essential uncleotides in UAS1. Mol Cell Biol 14:3842-52.
Cole, S.T., R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S.V. Gordon , K. Eiglmeier, S. Gas, C.E. Barry, F. Tekaia, K. Badcock, D. Basham, D. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, A. Krogh, J. McLean , S. Moule, L. Murphy, K. Oliver, J. Osborne, M.A. Quail, M.A. Rajandream , J. Rogers, S. Rutter, K. Seeger, J. Skelton, R. Squares, S. Squares, J.E. Sulston, K. Taylor, S. Whitehead, and B.G. Barrell. 1998. Deciphering the biology of Myobacterium tuberculosis from the complete genome. Nature 393:537-44.
Dennis, J.J., E.R. Lafontaine, and P.A. Sokol. 1996. Identification and characterization of the tolQRA genes of Pseudomonas aeruginosa. J Bacteriol 178:7059-68.
Fernandes, M., H. Xiao, and J.T. Lis. 1994. Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions. Nucleic Acids Res 22:167-73.
Glockner, F.O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, R. Rabus, H. Schlesner, R. Amann, and R. Reinhardt. 2003. complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc Natl Acad Sci U S A 100:8298-303.
Hassett, D.J., W.A. Woodruff, D.J. Wozniak, M.L. Vasil, M.S. Cohen, and D.E. Ohman. 1993. Cloning and characterization of the Pseudomonas aeruginosa sodA and sodB genes encoding manganese- and iron- cofactored superoxide dismutase: demonstration of increased manganese superoxide dismutase activity in alginate-producing bacteria. J Bacteriol 175:7658-65.
Holden, M.T., R.W. Titball, S.J. Peacock, A.M. Cerdeno-Tarraga, T. Atkins, L. C. Crossman, T. Pitt, C. Churcher, K. Mungall, S.D. Bentley, M. Sebaihia, N.R. Thomson, N. Bason, I.R. Beacham, K. Brooks, K.A. Brown, N.F. Brown, G.L. Challis, I. Cherevach, T. Chillingworth, A. Cronin, B. Crossett, P. Davis, D. DeShazer, T. Feltwell, A. Fraser, Z. Hance, H. Hauser, S. Holroyd, K. Jagels, K.E. Keith, M. Maddison, S. Moule, C. Price, M.A. Quail, E. Rabbinowitsch, K. Rutherford, M. Sanders, M. Simmonds, S. Songsivilai, K. Stevens, S. Tumapa, M. Vesaratchavest, S. Whitehead, C. Yeats, B.G. Barrell, P.C. Oyston, and J. Parkhill. 2004. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc Natl Acad Sci U S A 101:14240-5.
Huang, S. L., C. J. Yang, G. L. Guo, and S. H. Chou. 2004. Isolation, identification and properties of bacterial strains degrading octylphenol polyethoxylates. Taiwan Journal of Agricultural Chemistry and Food Science (In press).
Igarashi, K. and K. Kashiwagi. 1999. Polyamine transport in bacteria and yeast. Biochem J 344:633-42.
Iizuka, H. and K. Komagata. 1964. Microbiological studies on petroleum and natural gas. J Gen Appl Microbiol 10:207-21.
Ikeda, H., J. Ishikawa, A. Hanamoto, M. Shinose, H. Kikuchi, T. Shiba, Y. Sakaki, M. Hattori, and S. Omura. 2003. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat Biotechnol 21:526-31
Ikebe, T., S. Iyoda, and K. Kutsukake. 1999. Structure and expression of the filA operon of Salmonella typhimurium. Microbiology 145:1389-96.
Ishikawa, J., A. Yamashita, Y. Mikami, Y. Hoshino, H. Kurita, K. Hotta, T. Shiba, and M. Hattori. 2004. The complete genomic sequence of Nocardia farcinica IFM 10152. Proc Natl Acad Sci U S A 101:14925-30.
Isnard, M., A. Rigal, J.C. Lazzaroni, C. Lazdunski, and R. Lloubes. 1994. Maturation and localization of the TolB protein required for colicin import. Journal of Bacteriology 176:6392-6.
Kaneko, T., Y. Nakamura, C.P. Wolk, T. Kuritz, S. Sasamoto, A. Watanabe, M. Iriguchi, A. Ishikawa, K. Kawahima, T. Kimura, Y. Kishida, M. Kohara, M. Matsumoto, A. Matsuno, A. Muraki, N. Nakazaki, S. Shimpo, M. Sugimoto, M. Takazawa, M. Yamada, M. Yasuda, and S. Tabata. 2001. Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8:227-53.
Kaneko, T., Y. Nakamura, S. Sato, K. Minamisawa, T. Uchiumi, S. Sasamoto, A. Watanabe, K. Idesawa, M. Iriguchi, K. Kawashima, M. Kohara, M. Matsumoto, S. Shimpo, H. Tsuruoka, T. Wada, M. Yamada, and S. Tabata. 2002. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Res. 9:189-97.
Kunst, F., N. Ogasawara, I. Moszer, A. M. Albertini, G, Alloni, V. Azevedo, M.G. Bertero, P. Bessieres, A. Bolotin, S. Borchert, R. Borriss, L. Boursier, A. Brans, M. Braun, S.C. Brignell, S. Bron, S. Brouillet, C.V. Bruschi, B. Caldwell, V. Capuano, N.M. Carter, S.K. Choi, J.J. Codani, I.F. Connerton, and A. Danchin. 1997. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390:249-56.
Lee, Y.H., T.S. Chang, H.J. Liu, and W.S. Chu. 1998. An acidic glutary-7-aminocephalosporanic acid acylase from Pseudomonas nitroreducens. Biotechnol Appl Biochem 28:113-8.
Li, S.J. and J.E. Cronan. 1992. The genes encoding the two carboxyltransferase subunits of Escherichia coli Acetyl-CoA carboxylase. Journal of Biological Chemistry 267: 16841-7.
Mattevi, A., G. Obmolova, K.H. Kalk, W.J. van Berkel, and W.G. Hol. 1993. Three-dimensional structure of lipoamide dehydrogenase from Pseudomonas fluorescens at 2.8 A resolution. Analysis of redox and thermostability properties. J Mol Biol 230:1200-15.
Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T. DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A. Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J. Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler, and C. M. Fraser. 2002. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ Microbiol 4:799-808.
Pullikuth, A.K., and S.S. Gill. 1997. Primary structure of an invertebrate dihydrolipoamide dehydrogenase with phylogenetic relationship to vertebrate and bacterial disulfide oxidoreductases. Gene 200:163-72.
Sauer, K. and A.K. Camper. 2001. Characterization of phenotypic changes in Pseudomonas putida in response to surface-associated growth. J Bacteriol 183:6579-89.
Schuller, C., J.L. Brewster, M.R. Alexander, M.C. Gustin, and H. Ruis. 1994. The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiae CTT1 gene. EMBO J 13:4382-9.
Sokatch, J.R., V. McCully, J. Gebrosky, and D.J. Sokatch. 1981. Isolation of a specific lipoamide dehydrogenase for a branched-chain keto acid dehydrogenase from Pseudomonas putida. J Bacteriol 148:639-46
Staples, C. A., J. B. Williams, R. L. Blessing, and P. T. Varineau. 1999. Measuring the biodegradability of nonylphenol ether carboxylates, octylphenol ether carboxylates, and nonylphenol. Chemosphere 38:2029-39.
Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, and S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406:959-64
Timmis, K.N. 2002. Pseudomonas putida: a cosmopolitan opportunist par excellence. Environ Microbiol 12:779-81.
Toivonen, J.M., M.R. Boocock, and H.T. Jacobs. 1999. Modelling in Escherichia coli of mutation in mitoribosomal protein S12: novel mutant phenotypes of rpsL. Molecular Microbiology 31:1735-46.
Wolter, D.J., E. Smith-Moland, R.V. Goering, N.D. Hanson, and P.D. Lister. 2004. Multidrug resistance associated with mexXY expression in clinical isolates of Pseudomonas aeruginosa from a Texas hospital. Diagnostic Microbiology and Infectious Disease 50:43-50.
Wolter, D.J., N.D. Hanson, and P.D. Lister. 2004. Insertional inactivation of oprD in clinical isolates of Pseudomonas aeruginosa leading to carbapenem resistance. FEMS Microbiology Letter 236:137-43.
Xu, J., M.K. Bjursell, J. Himrod, S. Deng, L.K. Carmichael, H.C. Chiang, L.V. Hooper, and J.I. Gordon. 2003. A genomic view of the human-Bacteroides theaiomicron symbiosis. Science 299:2074-6.
Yamashita, M., A. Tani, and F. Kawai. 2005. A new ether bond-splitting enzyme found in Gram-positive polyethylene glycol 6000-utilizing bacterium, Pseudonocardis sp. strain K1. Appl Microbiol Biotechnol 66:174-9.
Yang, H.S., J.I. Morris, Q. Wang, L.G. Korotchkina, M. Kwon, and M.S. patel. 2001. Human dihydrolipoamide dehydrogenase gene transcription is mdiated by cAMP-response element-like site and TACGAC direct repeat. Inl J Biochem and Cell Biology 33:902-13.
Yang, H.S., M. Johnson, and M.S. Patel. 1999. Roles of an ETs motif and a novel CACGAC direct repeat in transcription of the murine dihydrolipoamide dehydrogenase (Dld) gene. Biochem J 338:667-75.
Yao, J., G. Zhang, Q. Wu, G.Q. Chen, and R. Zhang. 1999. Production of polyhydroxyalkanoates by Pseudomonas nitroreducens. Antonie van Leeuwenhoek 75: 345-9.
Zgurskaya, H. I. and H. Nikaido. 2000. Multidrug resistance mechanisms: drug efflux across two membranes. Mol Microbiol 37:219-25.
Zhang, G., X. Hang, G Phillip, K.P. Ho, and G.Q. Chen. 2001. PCR cloning of type Ⅱ polyhydroxyalkanoate biosynthesis genes from two Pseudomonas strains. FEMS Microbiology Letters 198:165-70. |