NERChem: Adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition

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Please use this identifier to cite or link to this item: https://ir.lib.ncu.edu.tw/handle/987654321/107080

Title:	NERChem: Adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition
Authors:	蔡宗翰;Tsai, Richard Tzong-Han;Hsiao, Yu-Cheng;Lai, Po-Ting
Contributors:	資訊電機學院資訊工程學系
Keywords:	Original
Date:	2016-01-01
Issue Date:	2026-04-23 13:55:42 (UTC+8)
Publisher:	Oxford University Press;England: Oxford University Press
Abstract:	摘要： Chemical patents contain detailed information on novel chemical compounds that is valuable to the chemical and pharmaceutical industries. In this paper, we introduce a system, NERChem that can recognize chemical named entity mentions in chemical patents. NERChem is based on the conditional random fields model (CRF). Our approach incorporates ( 1 ) class composition, which is used for combining chemical classes whose naming conventions are similar; ( 2 ) BioNE features, which are used for distinguishing chemical mentions from other biomedical NE mentions in the patents; and ( 3 ) full-token word features, which are used to resolve the tokenization granularity problem. We evaluated our approach on the BioCreative V CHEMDNER-patent corpus, and achieved an F-score of 87.17% in the Chemical Entity Mention in Patents (CEMP) task and a sensitivity of 98.58% in the Chemical Passage Detection (CPD) task, ranking alongside the top systems. Database URL: Our NERChem web-based system is publicly available at iisrserv.csie.n cu.edu.tw/nerchem. 其他題名： Database (Oxford) 出版者： England: Oxford University Press 出版日期： 2016-10-25 出處： Database : the journal of biological databases and curation, 2016-10, Vol.2016, p.baw135 版權： The Author(s) 2016. Published by Oxford University Press. 版權： The Author(s) 2016. Published by Oxford University Press. 2016 識別號： ISSN: 1758-0463 識別號： EISSN: 1758-0463 識別號： DOI: 10.1093/database/baw135 識別號： PMID: 31414701
Appears in Collections:	[Department of Computer Science and information Engineering] journal & Dissertation

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