博碩士論文 109423602 詳細資訊




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姓名 蔡昌赫(Chang-He Cai)  查詢紙本館藏   畢業系所 資訊管理學系
論文名稱 整合聚類與分類機器學習方法建立原發性肺癌二次癌症預測模型
(Integrating Clustering and Classification Machine Learning Methods to Build a Second Primary Cancer Prediction Model in Lung Cancer Survivors)
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摘要(中) 肺癌爲全球癌症死亡佔比第一的癌症,2020 年全球已有約 210 萬人被診斷罹患肺癌,同年因癌症死亡人數約 180 萬,分別佔全球總人數的 11.4%與 18%,死亡率常年居世界首位。隨著癌症診斷工具與治療方式的改進,肺癌患者的存活時間顯著增長,相應地,肺癌患者在罹患肺癌後發生二次癌症的數量在近十年中也有明顯的增長趨勢,對肺癌患者發生二次癌症風險的評估成爲一項重要議題。本研究旨在使用包含邏輯斯迴歸、隨機森林、支持向量機、極限梯度提升、單層前饋神經網絡以及堆疊模型等六種機器學習演算法,使用 2004 至 2018年至長庚醫院就診的十大癌症患者之登記資料建立肺癌二次癌症預測模型,其中以極限梯度提升訓練的預測模型作爲最終模型,平均AUROC達到0.755,標準差爲0.037。研究還使用非監督式聚類分析方法對肺癌患者進行異質性分析,將非監督聚類分群結果作爲新特徵,與原有特徵整合後,以監督式機器學習方法進行模型。結果顯示結合聚類分群結果的預測模型與其他模型相比效能並無顯著差異。在運用SHAP解釋模型方法進行特徵重要性分析後,我們發現在重要特徵因子中,患者進行手術切除原發部位、惡性肋膜積水情況不詳、整併期別爲StageⅠ與發生肺癌二次癌症風險呈正相關,而患者波及臟層膜或彈性層情況不詳、整併期別爲StageⅣ則與肺癌二次癌症風險呈負相關。最後,研究基於 R 語言中的 shiny 套件部署最終預測模型建立了一個針對肺癌二次癌症預測的臨床決策支援系統,供醫師參考。
摘要(英) Lung cancer is the leading cause of cancer death in the world. In 2020, about 2.1 million people worldwide were diagnosed with lung cancer, and about 1.8 million died, accounting for 11.4% and 18% of the global total, respectively. The mortality rate is ranking first in the world for more serval years. With the improvement of cancer diagnostic tools and treatment methods, the survival rate of lung cancer has increased significantly. Correspondingly, the number of lung cancer survivors with second primary cancer after suffering from lung cancer has also increased significantly in the past decade. The assessment of second primary cancer risk has become an important topic. This study aims to use six machine learning algorithms including logistic regression, random forest, support vector machine, extreme gradient boosting, single-layer feed-forward neural network, and stacking model, using the cancer registry data from Chang Gung Memorial Hospital from 2004 to 2018. The registration data of cancer patients was used to establish a prediction model for second primary cancer of lung cancer survivors. The average AUROC of models trained by XGBoost reached 0.755 and the standard deviation was 0.037. The study also used an unsupervised cluster analysis method to analyze the heterogeneity of lung cancer patients, combining supervised and unsupervised machine learning methods in the form of adding unsupervised clustering analysis results as new features to supervised machine learning methods for training. The results showed that the predictive model combined with the cluster analysis method had no significant difference in performance compared with other models. After using the SHAP interpretation model to analyze the importance of features, we found that among the important feature factors, patients undergoing surgical resection of the primary site, the status of malignant pleural effusion is unknown, and the stage of integration stage I is positively correlated with the risk of second primary cancer of lung cancer, while the patient′s involvement in the visceral membrane or elastic layer is unknown, and the stage IV is negatively correlated with the risk of second primary cancer of lung cancer. Finally, a clinical decision support system for second primary cancer prediction of lung cancer was established based on the final prediction model deployed by the shiny suite in the R language for reference by physicians.
關鍵字(中) ★ 肺癌
★ 二次癌症
★ 聚類分析
★ 機器學習
★ 預測模型
關鍵字(英) ★ Lung cancer
★ Second primary cancer
★ cluster analysis
★ machine learning
★ predictive model
論文目次 論文摘要 i
Abstract ii
目錄 iii
表目錄 vi
圖目錄 viii
第一章 緒論 - 1 -
1.1 研究背景 - 1 -
1.1.1 肺癌流行病學概述 - 1 -
1.1.2 二次癌症流行病學概述 - 2 -
1.1.3 機器學習-分類演算法 - 3 -
1.1.4 機器學習-聚類分析演算法 - 3 -
1.2 研究動機 - 4 -
1.3 研究目的 - 5 -
第二章 文獻探討 - 6 -
2.1 與肺癌及二次癌症有關的危險因子 - 6 -
2.2 二次癌症預測模型 - 7 -
第三章 研究方法 - 9 -
3.1 資料來源 - 9 -
3.2 資料前處理 - 10 -
3.3特徵編碼轉換 - 11 -
3.3.1 性別 - 11 -
3.3.2 腫瘤大小 - 12 -
3.3.3 區域淋巴結侵犯數目 - 13 -
3.3.4 整併期別 - 14 -
3.3.5 原發部位手術邊緣 - 14 -
3.3.6 分級/分化 - 16 -
3.3.7 是否接受原發部位切除手術 - 16 -
3.3.8 是否接受放射治療 - 17 -
3.3.9 是否接受全身性治療 - 17 -
3.3.10 身體質量指數 - 18 -
3.3.11 吸菸行爲 - 19 -
3.3.12 嚼檳榔行爲 - 19 -
3.3.13 喝酒行爲 - 20 -
3.3.14 癌症部位特定因子 - 21 -
3.4 定義對照組與病例組 - 24 -
3.5 缺失值處理 - 24 -
3.6 編碼演算法 - 25 -
3.7 特徵選擇 - 27 -
3.8 聚類分析 - 28 -
3.9 建立預測模型 - 28 -
3.10 評估模型效能 - 32 -
3.11模型訓練與驗證策略流程 - 33 -
3.12 解釋模型 - 34 -
3.13 臨床決策支援系統開發 - 35 -
3.14 統計方法 - 35 -
第四章 結果 - 37 -
4.1 資料清理 - 37 -
4.2 患者特徵資料 - 38 -
4.3 資料集比較 - 42 -
4.3.1 非小細胞肺癌資料與所有肺癌資料分佈比較 - 42 -
4.3.2 不同缺失值處理方法之資料分佈 - 45 -
4.3.3 不同聚類資料分佈比較 - 48 -
4.4 模型效能 - 51 -
4.5 預測結果資料分佈 - 56 -
4.6 重要特徵 - 58 -
4.7肺癌患者罹患二癌風險評估決策支援系統 - 60 -
第五章 討論 - 62 -
第六章 結論 - 66 -
參考資料 - 67 -
附錄 - 72 -
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指導教授 許智誠 曾意儒(Jyh-Cheng Hsu Yi-Ju Tseng) 審核日期 2022-7-16
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