參考文獻 |
[1] D.L. Robertson and G.F. Joyce “Selection in Vitro of an RNA Enzyme that Specifically Cleaves Single-stranded DNA”, Nature, 344 (1990) 467-468.
[2] C. Tuerk and L. Gold “Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase”, Science, 249 (1990) 505-510.
[3] A.D. Ellington and J.W. Szostak “In vitro selection of RNA molecules that bind specific ligands”, Nature, 346 (1990) 818-822.
[4] S.C.B. Gopinath and T.S. Misono “An RNA aptamer that distinguishes between closely related human influenza viruses and inhibits haemagglutinin-mediated membrane fusion”, Journal of General Virology, 87 (2006) 479-487.
[5] S. Sekiya and K. Nod,” Characterization and application of a novel RNA aptamer against the mouse prion protein”, Journal of Biochemistry, 139 (2006) 383-1390.
[6] F. Nishikawa and K. Funaji “In vitro selection of RNA aptamers against the HCVNS3 helicase domain”, Oligonucleotides, 14 (2004) 114-129.
[7] J. Ciesiolka and J. Gorski “Selection of an RNA domain that binds Zn2+”, RNA publication of the RNA society, 1 (1995) 538-550.
[8] D. Nieuwlandt and M. Wecker “In vitro selection of RNA ligands to substance-P”, Biochemistry, 34 (1995) 5651-5659.
[9] M. Khati and M. Schuman “Neutralization of infectivity of diverse R5 clinical isolates of human immunodeficiency virus type 1 by gp120-binding 2′F-RNA aptamers”, Journal of Virology, 77 (2003) 12692-12698.
[10] F. Pileur and M.L. Andreola “Selective inhibitory DNA aptamers of the human RNase H1”, Nucleic acids research, 31 (2003) 5776-5788.
[11] T.S. Misono and P.K.R. Kumar “Selection of RNA aptamers against human influenza virus hemagglutinin using surface plasmon resonance”, Analytical biochemistry, 342 (2005) 312-317.
[12] S.D. Mendonsa and M.T. Bowser “In vitro selection of aptamers with affinity for neuropeptide Y using capillary electrophoresis”, Journal of the American Chemical Society, 127 (2005) 9382-9383.
[13] S.D. Mendonsa and M.T. Bowser “In vitro selection of high-affinity DNA ligands for human IgE using capillary electrophoresis”, Analytical chemistry, 76 (2004) 5387-5392.
[14] A. Drabovich and M. Berezovski “Selection of smart aptamers by equilibrium capillary electrophoresis of equilibrium mixtures(ECEEM)”, Journal of the American Chemical Society, 127 (2005) 11224-11225.
[15] M.V. Berezovski and M.U. Musheev “Non-SELEX: selection of aptamers without intermediate amplification of candidate oligonucleotides”, Nature protocols, 1 (2006) 1359-1369.
[16] M. Blank and T. Weinschenk “Systematic evolution of a DNA aptamer binding to rat brain tumor microvessels-Selective targeting of endothelial regulatory protein pigpen”, Journal of Biological Chemistry, 276 (2001) 16464-16468.
[17] X.B. Yang and X. Li “Immunofluorescence assay and flow-cytometry selection of bead-bound aptamers”, Nucleic acids research, 31 (2003).
[18] L. A. Jones “Aptamers to hepatitis c virus polymerase”, University of New South Wales, 2005
[19] J.C. Cox and A.D. Ellington “Automated selection of anti-protein aptamers”, Bioorganic & Medicinal Chemistry, 9 (2001) 2525-2531.
[20] C. Bock and M. Coleman “Photoaptamer arrays applied to multiplexed proteomic analysis”, Proteomics, 4 (2004) 609-618.
[21] D. Eulberg and K. Buchner “Development of an automated in vitro selection protocol to obtain RNA-based aptamers: identification of a biostable substance Pantagonist”, Nucleic acids research, 33 (2005).
[22] Yoshihito Yoshida, Nobuya Sakai, and Iwao Waga “Rabbit antibody detection with RNA aptamer”, Analytical Biochemistry, 375 (2008) 217-222.
[23] B. E. Eaton, W. A. Pieken, “Ribonucleosides and RNA”, Annual Review of Biochemistry 1995, 64, 837-863.
[24] S. Balamurugan, A. Obubuafo, , S. A Soper. R. L. McCarley, D. A. Spivak “Designing highly specific biosensing surfaces using aptamer monolayers on gold”, Langmuir 2006, 22 (14), 6446-6453.
[25] D. Bangham, M. M. Standish and J. C. Watkins “Diffusion of Univalent Ions across the Lamellae of Swollen Phosopholipid”. J. Mol. Biol. 1965, 13, 238-252.
[26] E. Locascio Laurie, S. Hong Jennifer, Gaitan Michael “Liposomes as signal amplification reagents for bioassays in microfluidic channels”, Electrophoresis, 2002, 23, 799–804.
[27] Katie A. Edwards, Antje J. Baeumner “Liposomes in analyses”, Talanta 68 (2006) 1421–1431.
[28] D.L. Bates, Enzyme amplification in diagnostics, Trends in Biotechnology, Vol. 5, Issue 7, p204-209, July, 1987.
[29] M. A. Jones, P. K. Kilpatrick, R. G. Carbonell “Preparation and characterization of bifunctional unilamellar vesicles for enhanced immunosorbent assays”, Biotechnol. Prog. 1993, 9, 242-258.
[30] S.J. Frost, J. Chakraborty, G.B. Firth “Urinary microalbumin measurement using a homogeneous liposomal immunoassay”, Journal of Immunological Methods 194 (1996) 105-l11
[31] A. S. Janoff, S. Carpenter-Green, A. L. Weiner, J. Seibold, G. Weissmann, and M. J. Ostro “Novel liposome composition for a rapid colorimetric test for systemic lupus erythematosus”, Clin. Chem. 29, 1587–1592, (1983).
[32] Thijs Wink , Steven J. van Zuilen , Auke Bult , and Wouter P. van Bennekom “Liposome-Mediated Enhancement of the Sensitivity in Immunoassays of Proteins and Peptides in Surface Plasmon Resonance Spectrometry”, Anal. Chem., 1998, 70 (5), pp 827–832.
[33] M. M. Atalla, E. Tannenbaum and E. J. Scheibner “Stabilization of Silicon Surfaces by Thermally Grown Oxides” Bell System Technical Journal, Vol. 38 (May 1959), pp. 749-783.
[34] C.-C. Tsai, P.-L. Chiang, C.-J. Sun, T.-W. Lin, M.-H. Tsai, Y.-C. Chang and Y.-T. Chen “Surface potential variations on a silicon nanowire transistor in biomolecular modification and detection”, Nanotechnology, 2011, 22, 135503.
[35] E. Stern, R. Wagner, F. J. Sigworth, R. Breaker, T. M. Fahmy, and M. A. Reed “Importance of the Debye screening length on nanowire field effect transistor sensors”, Nano Lett., vol. 7, no. 11, pp. 3405-3409, Oct. 2007.
[36] Roey Elnathan, Moria Kwiat, Alexander Pevzner, Yoni Engel, Larisa Burstein, Artium Khatchtourints, Amir Lichtenstein, Raisa Kantaev, and Fernando Patolsky “Biorecognition Layer Engineering: Overcoming Screening Limitations of Nanowire-Based FET Devices”, Nano Lett. 2012, 12, 5245−5254.
[37] Luye Mu, Ye Chang, Sonya D. Sawtelle, Mathias Wipf, and Xuexin Duan “Silicon Nanowire Field-Effect Transistors - A Versatile Class of Potentiometric Nanobiosensors”, IEEE Access, Volume 3, 2015.
[38] Chi-Chang Wu, Tung-Ming Pan, Chung-Shu Wu, Li-Chen Yen, Cheng-Keng Chuang, See-Tong Pang, Yuh-Shyong Yang, Fu-Hsiang Ko “Label-free Detection of Prostate Specific Antigen Using a Silicon Nanobelt Field-effect Transistor”, Int. J. Electrochem. Sci., 7 (2012) 4432 – 4442.
[39] Xiaowu Tang, Sarunya Bansaruntip , Nozomi Nakayama , Erhan Yenilmez , Ying-lan Chang , and Qian Wang “Carbon Nanotube DNA Sensor and Sensing Mechanism”, Nano Lett., 2006, 6 (8), pp 1632–1636.
[40] E. Stern, E. R. Steenblock, M. A. Reed, and T. M. Fahmy “Label-free electronic detection of the antigen-specific T-cell immune response”, Nano Lett., vol. 8, no. 10, pp. 3310-3314, 2008.
[41] Zhiqiang Gao, Ajay Agarwal, Alastair D. Trigg, Navab Singh, Cheng Fang, Chih-Hang Tung, Yi Fan, Kavitha D. Buddharaju, and Jinming Kong “Silicon nanowire arrays for label-free detection of DNA”, Anal. Chem., vol. 79, no. 9, pp. 3291-3297, Apr. 2007.
[42] Seong-Wan Ryua, Chang-Hoon Kima, Jin-Woo Hana, Chung-Jin Kima, Cheulhee Jungb, Hyun Gyu Parkb, Yang-Kyu Choi “Gold nanoparticle embedded silicon nanowire biosensor for applications of label-free DNA detection”, Biosensors Bioelectron., vol. 25, no. 9, pp. 2182-2185, May 2010.
[43] Vadim Krivitsky, Lo-Chang Hsiung, Amir Lichtenstein, Boris Brudnik, Raisa Kantaev, Roey Elnathan, Alexander Pevzner, Artium Khatchtourints, and Fernando Patolsky “Si Nanowires Forest-Based On-Chip Biomolecular Filtering, Separation and Preconcentration Devices: Nanowires Do it All”, Nano Lett. 2012, 12, 4748−4756.
[44] HENK M. BucK, LEO H. Koole, MARCEL H. P. Van Gendgren, Lia Smrr, Jan L. M. C. GEELEN, SUZANNE JURRLAANS, JAAP GOUDSMrr “Phosphate-Methylated DNA Aimed at HIV-1 RNA Loops and Integrated DNA Inhibits Viral Infectivity”, Science, Vol.248.
[45] Xiaoteng Luo, I-Ming Hsing “Real Time Electrochemical Monitoring of DNA/PNA Dissociation by Melting Curve Analysis”, Electroanalysis 2009, 21, No. 14, 1557 – 1561.
[46] Uffe Koppelhus, Peter E. Nielsen “Cellular delivert of peptide nucleic acid”, Advanced Drug Delivery Review 55 (2003) 267-280.
[47] Peter E. Nielsen “Peptide nucleic acid: a versatile tool in genetic diagnostics and molecular biology”, Current Opinion in Biotechnology 2001, 12:16–20.
[48] S. Tomac, M. Sarkar, T. Ratilainen, P. Wittung, P.E. Nielsen, B. Norden, and A. Graslund, “Ionic effects on the stability and conformation of peptide nucleic acid complexes”. J. Am. Chem. Soc., 118, 5544–5552. (1996)
[49] Monica Borgatti, Laura Breda, Rita Cortesi, Claudio Nastruzzi, Alessandra Romanelli, Michele Saviano, Nicoletta Bianchi, Carlo Mischiati, Carlo Pedone, Roberto Gambari “Cationic liposomes as delivery systems for double-stranded PNA-DNA chimers exhibiting decoy activity against NF-κB transcription factors”, Biochemical Pharmacology 64 (2002) 609-616.
[50] Michael Egholm, Ole Buchardt, Leif Christensen, Carsten Behrens, Seog K. Kim, Bengt Norden, and Peter E. Nielsen “PNA hybridizes to complementary oligonucleotides obeying the watson-crick hydrogen bonding rules”, Nature, vol 365. 566-568, 7 Oct. 1993.
[51] JESPER WENGEL “Synthesis of 3¢-C- and 4¢-C-Branched Oligodeoxynucleotides and the Development of Locked Nucleic Acid (LNA)”, Acc. Chem. Res. 1999, 32, 301-310.
[52] Kent Bondensgaard, Michael Petersen, and Jens Peter Jacobsen “Structural Studies of LNA:RNA Duplexes by NMR: Conformations and Implications for RNase H Activity”, Chem. Eur. J. 2000, 6, No.15.
[53] Alexei A. Koshkin, Poul Nielsen, Michael Meldgaard, Vivek K. Rajwanshi, Sanjay K. Singh, and Jesper Wengel “LNA (Locked,Nucleic,Acid):An RNA Mimic Forming Exceedingly Stable LNA:LNA Duplexes”. J. Am. Chem. Soc. 1998, 120, 13252-13253.
[54] Henrik F. Hansen, Troels Koch, and Santaris Pharma “Effect of LNA Modifications on Small Molecule Binding to Nucleic Acids”, Journal of Biomolecular Structure & Dynamics, Volume 21, Issue Number 6, 841-850, (2004).
[55] Joshua D. Levin, Dean Fiala, Meinrado F. Samala, Raymond J. Peterson “Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers”, Nucleic Acids Research, 2006, Vol. 34, No. 20, September 27, 2006.
[56] Curtis B. Hughesman, Robin F. B. Turner, and Charles A. Haynes “Role of the Heat Capacity Change in Understanding and Modeling Melting Thermodynamics of Complementary Duplexes Containing Standard and Nucleobase-Modified LNA”, Biochemistry, 2011, 50, 5354-5368.
[57] Anna Va´lo´ czi, Csaba Hornyik, No´ ra Varga, Jo´ zsef Burgya´n, Sakari Kauppinen1 and Zolta´n Havelda “Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes”, Nucleic Acids Research, 2004, Vol. 32, No. 22.
[58] Patricia M. McTigue, Raymond J. Peterson, and Jason D. Kahn “Sequence-Dependent Thermodynamic Parameters for Locked Nucleic Acid (LNA)-DNA Duplex Formation”, Biochemistry, 2004, 43, 5388-5405.
[59] Yong You, Bernardo G. Moreira, Mark A. Behlke and Richard Owczarzy “Design of LNA probes that improve mismatch discrimination”, Nucleic Acids Research, 2006, Vol. 34, No. 8.
[60] Crinelli R, Bianchi M, Gentilini L, Palma L, Magnani, M,”Locked nucleic acids (LNA): Versatile tools for designing oligonucleotide decoys with high stability and affinity”, Current Drug Targets, Volume 5, Number 8, November 2004, pp. 745-752(8)
[61] Leo H. Koole, Marcel H.P. van Genderen, Hiddle Frankena, Henk J.M. Kocken, Jan A. Kanters, and Henk M. Buck “A stable parallel duplex structure for the hexamer d(TpTpTpTpTpTp) with phosphate trimester linkages”, Chemistry B89(1), March 24, 1986.
[62] Marcel H. P. van Genderen, Leo H. Koole, and Henk M. Buck “Hybridization of phosphate-methylated DNA and natural oligonucleotides. Implications for protein-induced DNA duplex destabilization”, Recl. Trav. Chim. Pays-Bas 108, 28-35 (1989).
[63] Leo H. Koole, Marcel H.P. van Genderen, Rob G. Reiniers, and Henk M. Buck “Enhanced stability of a Watson & Crick DNA duplex structure by methylation of the phosphate groups in one strand”, Chemistry B90(1), March 30, 1987.
[64] Harold M. Moody, Marcel H.P. van Genderen, Leo H. Koole, Henk J.M.Kocken, Emmo M.Meijer and Henk M.Buck, Regio “specific inhibition of DNA duplication by antisense phosphate-methylated oligodeoxynucleotides”, Nucleic Acids Research, Vol. 17, N0. 12, 1989.
[65] Sophie Raffy and Justin Teissie “Control of Lipid Membrane Stability by Cholesterol Content”, Biophysical Journal, Volume 76, (1999), 2072-2080.
[66] Markus Johnsson and Katarina Edwards “Interactions between Nonionic Surfactants and Sterically Stabilized Phophatidyl Choline Liposomes”, Langmuir 2000, 16, 8632-8642.
[67] Shruti Shukla & Hyerim Leem & Myunghee Kim “Development of a liposome-based immunochromatographic strip assay for the detection of Salmonella”, Anal Bioanal Chem (2011) 401:2581–2590.
[68] Deborah Ribble, Nathaniel B Goldstein, David A Norris, and Yiqun G Shellman “A simple technique for quantifying apoptosis in 96-well plates”, BMC Biotechnol. 2005; 5: 12.
[69] Qin Zhang and Liang-Hong Guo “Multiple Labeling of Antibodies with Dye/DNA Conjugate for Sensitivity Improvement in Fluorescence Immunoassay”, Bioconjugate Chem. 2007, 18, 1668-1672.
[70] J¨org Meyer and Uwe Karst, “Enzyme-linked immunosorbent assays based on peroxidase labels and enzyme-amplified lanthanide luminescence detection”, Analyst, 2001, 126, 175–178
[71] Angelika Lueking, Martin Horn, Holger Eickhoff, Konrad Bu¨ ssow, Hans Lehrach, and Gerald Walter “Protein Microarrays for Gene Expression and Antibody Screening”, Analytical Biochemistry 270, 103–111 (1999)
[72] Heng Zhu, and Muchael Snyder “Protein chip technology”, Current Opinion in Chemical Biology, 2003, 7: 55-63.
[73] Anran Gao, Nengli Zou, Pengfei Dai, Na Lu, Tie Li, Yuelin Wang, Jianlong Zhao, and Hongju Mao “Signal-to-Noise Ratio Enhancement of Silicon Nanowires Biosensor with Rolling Circle Amplification”, Nano Lett. 2013, 13, 4123−4130.
[74] K.M. Ririe, R.P. Rasmussen, C.T. Wittwer “Product differentiation by analysis of DNA melting curves during the polymerase chain reaction”, Anal. Biochem. 245 (1997) 154–160.
[75] Marta Hernandez, David Rodrıguez-Lazaro, Teresa Esteve, Salome Prat, and Maria Plaa, “Development of melting temperature-based SYBR Green I polymerase chain reaction methods for multiplex genetically modified organism detection”, Analytical Biochemistry 323 (2003) 164–170.
[76] Christoffer Nellåker, Ulf Wållgren, and Håkan Karlsson “Molecular Beacon–Based Temperature Control and Automated Analyses for Improved Resolution of Melting Temperature Analysis Using SYBR I Green Chemistry”, Clinical Chemistry 53:1 98–103 (2007)
[77] E.Navarro, G. Serrano Heras, M.J. Castano, J. Solera “Real-time PCR detection chemistry”, Clinica Chimica Acta, Volume 439, 15 January 2015, Pages 231–250.
[78] A. I. Dragan, R. Pavlovic, J. B. McGivney, J. R. Casas-Finet, E. S. Bishop, R. J. Strouse, M. A. Schenerman, C. D. Geddes, “SYBR Green I: Fluorescence Properties and Interaction with DNA”, JOURNAL OF FLUORESCENCE, (2012) 22:1189–1199.
[79] Jan Floria´n, Jirˇı´ Sÿponer, and Arieh Warshel “Thermodynamic Parameters for Stacking and Hydrogen Bonding of Nucleic Acid Bases in Aqueous Solution: Ab Initio/Langevin Dipoles Study”, J. Phys. Chem. B 1999, 103, 884-892.
[80] Ana Maria Soto, Besik I. Kankia, Prasad Dande, Barry Gold, and Luis A. Marky “Thermodynamic and hydration effects for the incorporation of a cationic 3-aminopropyl chain into DNA”, Nucleic Acids Res. 2002 Jul 15; 30(14): 3171–3180.
[81] Jill A. Holbrook, Michael W. Capp, Ruth M. Saecker, and M. Thomas Record, Jr. “Enthalpy and Heat Capacity Changes for Formation of an Oligomeric DNA Duplex: Interpretation in Terms of Coupled Processes of Formation and Association of Single-Stranded Helices”, Biochemistry 1999, 38, 8409-8422.
[82] Frederick P. Schwarz, Scott Robinson and John M. Butler “Thermodynamic comparison of PNA/DNA and DNA/DNA hybridization reactions at ambient temperature”, Nucleic Acids Research, 1999, Vol. 27, No. 24.
[83] XianYu Piao & Ying Yan & Jing Yan & YiFu Guan “Enhanced recognition of non-complementary hybridization by single-LNA-modified oligonucleotide probes”, Anal Bioanal Chem (2009) 394:1637–1643
[84] Song-Bai Zhang, Zai-Sheng Wu, Meng-Meng Guo, Guo-Li Shen , Ru-Qin Yu “A novel immunoassay strategy based on combination of chitosan and a gold nanoparticle label”, Talanta 71 (2007) 1530–1535.
[85] Peng Wu, Shu-ichi Nakano and Naoki Sugimoto “Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation”, Eur. J. Biochem. 269, 2821–2830 (2002).
[86] Jens Kurreck, Eliza Wyazko, Clemens Gillen, and Volker A. Erdmann “Design of antisense oligonucleotides stabilized by locked nucleic acids”, Nucleic Acids Research, 2002, Vol. 30, No. 9, 1911-1918.
[87] Elzbieta Kierzek, Anna Pasternak, Karol Pasternak, Zofia Gdaniec, Ilyas Yildirim “Douglas H. Turner, and Ryszard Kierzek, Contributions of Stacking, Preorganization, and Hydrogen Bonding to the Thermodynamic Stability of Duplexes between RNA and 2’-O-Methyl RNA with Locked Nucleic Acids”, Biochemistry 2009, 48, 4377-4387.
[88] Munna C. Chakrabarti and Frederick P. Schwarz “Thermal stability of PNA/DNA and DNA/DNA duplexes by differential scanning calorimetry”, Nucleic Acids Research, 1999, Vol. 27, No. 24 4801–4806.
[89] Tommi Ratilainen, Anders Holme´n, Eimer Tuite, Peter E. Nielsen,| and Bengt Norde´n “Thermodynamics of Sequence-Specific Binding of PNA to DNA”, Biochemistry 2000, 39, 7781-7791.
[90] James P. Vernille, Lara C. Kovell, and James W. Schneider “Peptide Nucleic Acid (PNA) Amphiphiles: Synthesis, Self-Assembly, and Duplex Stability”, Bioconjugate Chem. 2004, 15, 1314−1321.
[91] Jhimli Bhattacharyya, Souvik Maiti, Sanjukta Muhuri, Shu-ichi Nakano, Daisuke Miyoshi, and Naoki Sugimoto “Effect of Locked Nucleic Acid Modifications on the Thermal Stability of Noncanonical DNA Structure”, Biochemistry 2011, 50, 7414−7425
[92] Harleen Kaur, Jesper Wengel, and Souvik Maiti “Thermodynamics of DNA-RNA Heteroduplex Formation: Effects of Locked Nucleic Acid Nucleotides Incorporated into the DNA Strand”, Biochemistry 2008, 47, 1218-1227
[93] Jaroslav Kypr, Iva Kejnovska´, Daniel Renciuk and Michaela Vorlıckova “SURVEY AND SUMMARY Circular dichroism and conformational polymorphism of DNA”, Nucleic Acids Research, 2009, Vol. 37, No. 6 1713–1725
[94] W. Curtis Johnson. Jr “Protein Sencondary Structure and Circular Dichroism: A Practical Guide”, Proteins Structure, Function, and Genetics 7: 205-214 (1990).
[95] Kuo-Chih Lin, Ming-Tsai Wey, Lou-Sing Kan & David Shiuan “Characterization of the Interactions of Lysozyme with DNA by Surface Plasmon Resonance and Circular Dichroism Spectroscopy”, Appl Biochem Biotechnol (2009) 158:631–641.
[96] Harleen Kaur, Amit Arora, Jesper Wengel, and Souvik Maiti “Thermodynamic, Counterion, and Hydration Effects for the Incorporation of Locked Nucleic Acid Nucleotides into DNA Duplexes”, Biochemistry 2006, 45, 7347-7355
|